View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_low_16 (Length: 483)
Name: NF13125_low_16
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 469
Target Start/End: Complemental strand, 34958333 - 34957875
Alignment:
| Q |
16 |
cattccttccaatgactctcaacctatcatacctctttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcaga |
115 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34958333 |
cattcctgccaatgactctcaacctatcatacctccttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcaga |
34958234 |
T |
|
| Q |
116 |
atttgttgtatcagcaccagataat-----gttgcatctatgtgataaggatgctcatgcttcttgaaattataatcatccaaaccaatcttgaaaagat |
210 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
34958233 |
atttgttgtatcagcaccagataatataatgttgcatctatgtgacaaggatgctcatgctttttgaaattataattatccaaaccaatcttgaaaagat |
34958134 |
T |
|
| Q |
211 |
agaaactcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttcaccaagttcaacatttttgtggat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34958133 |
agaaactcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttcaccaagttcaacatttttgtggat |
34958034 |
T |
|
| Q |
311 |
tcttgcagcaccaagaagcgccccccaaacggatccatcagcttcaaatggaatggaattcataagttccaccgcttcatttagtttccctgatttccaa |
410 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34958033 |
tcttgcagcaccaagaagcgcccctcaaacggatccatcagcttcaaatggaatggaattcataagttccaccgcttcatttagtttccctaatttccaa |
34957934 |
T |
|
| Q |
411 |
ggatatcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcctcc |
469 |
Q |
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| T |
34957933 |
ggatatcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcctcc |
34957875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 3922313 - 3922584
Alignment:
| Q |
16 |
cattccttccaatgactctcaacctatcatacctctttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcaga |
115 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
3922313 |
cattcctaccaatgactctcaacctatcatacctccttctcaaatgttcacctccaatttgagttggaaagaaaacaagttcttcttctaaatcatcata |
3922412 |
T |
|
| Q |
116 |
atttgttgtatcagcaccagataatgttgcatctatgtgataaggatgctcatgcttcttgaaattataatcatccaaaccaatcttgaaaagatagaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3922413 |
atttgttgtatcagcaccagataatgttgcatctatgtgacaaggatgctcatgcttcttgaaattataattatccaaaccaatcttgaaaagatagaaa |
3922512 |
T |
|
| Q |
216 |
ctcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttca |
287 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3922513 |
ctcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgcttca |
3922584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 285 - 469
Target Start/End: Original strand, 50131576 - 50131761
Alignment:
| Q |
285 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaacggatccatcagcttcaaatggaatggaattcataagttccaccg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| | |
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| T |
50131576 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaacggatccatcggcttcaaatggaatggaattcacaagctccactg |
50131675 |
T |
|
| Q |
385 |
cttcatttagtttccctgat-ttccaaggatatcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcctcc |
469 |
Q |
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| T |
50131676 |
cttcatttagtttccctgatcttccaaggagatcaatcatgcaagcatggtgctcttgtgttggtttgattccaaacttttcctcc |
50131761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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