View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13125_low_2 (Length: 1048)
Name: NF13125_low_2
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 26)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 15 - 656
Target Start/End: Complemental strand, 36630866 - 36630219
Alignment:
| Q |
15 |
gagatgaagactgggaggtgcagccgaggcagatgccgcggcagaagcaggagcaaaagcagactca---gcacaagcaggtgcaacaaagaaagaggca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
36630866 |
gagatgaagactgggaggtgcagccgaggcagacgccacggcagaagcaggagcaaaagcagactcatcagcacaagcaggtgcaacagagaaagaggca |
36630767 |
T |
|
| Q |
112 |
ggcgtggtaacttgtgagcgatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttctta |
211 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36630766 |
ggcgtggcaatttgtgagcgatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttctta |
36630667 |
T |
|
| Q |
212 |
tggctgtttcatttaaaattatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataactacctgcttaagatta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36630666 |
tggctgtttcatttaaaattatctaagcttagattgtcaaaaaaataattaccacacttggctcccttatgacttttaaataactacctgcttaagatta |
36630567 |
T |
|
| Q |
312 |
aaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaactattccatcaggtatggcaggtaattctaaac |
411 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36630566 |
aaacaacctgggtaatctgttgtgatgttaacttcagccgacgacgggttttgtcgcaagaagtcaactattccatcaggtatggcaggtaattctaaac |
36630467 |
T |
|
| Q |
412 |
ctgctttaaacgcctttcttaacttatcggcttctttacttgacttagcagcaactttctttaacatggcatctttcattaatagaaataaatgtcc--- |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36630466 |
ctgctttaaacgcctttcttaacttatcggcttctttacttgacttagcagcaactttctttaacatgacatctttcattaatagaaataaatgtccatg |
36630367 |
T |
|
| Q |
509 |
atgaagtggtatcagttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaatt |
608 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36630366 |
atgaagtggtatcatttttacttccaatgacctcaagttacaaaaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaatt |
36630267 |
T |
|
| Q |
609 |
ggggtgaattaggattagttttatgcaactcaaatgaatattaaattt |
656 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36630266 |
ggggtgaattaggattagttttatgcaagtcaaatgaatattaaattt |
36630219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 775 - 1019
Target Start/End: Complemental strand, 36628019 - 36627775
Alignment:
| Q |
775 |
tagtaaaactttttatgtgattttgaattaaatctctaactatacgatttgcaaataataaaattgttatcaaattgctgttagctagatgtgatgtaag |
874 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36628019 |
tagtaaaactttttatgtgatgttgaattaaatctctaactatacgatttgcaaataataaaattgttatcaaattgctgttagctagatgtgatgtaag |
36627920 |
T |
|
| Q |
875 |
gaaagcgagaactcagaattgaaatggggagaagaaggagaaagaataatcgcagtacaaagaaagacaccacacacattcaaatttaattttttatttt |
974 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
36627919 |
gaaagcgagaactcagaattgaaatggggagaagaaggagaaagaataattgcagtacaaagaaagacaccacacacatacaaattttattttttatttt |
36627820 |
T |
|
| Q |
975 |
aaaccgttaagattgatcaaagggttactgattaaccctctcata |
1019 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36627819 |
aaaccgttaagattgatcaaagggttactgattaaccctctcata |
36627775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 130 - 619
Target Start/End: Original strand, 36642258 - 36642740
Alignment:
| Q |
130 |
cgatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaa |
229 |
Q |
| |
|
|||||| |||| ||||| | ||||||||||||||| ||||||| ||||||| ||| |||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
36642258 |
cgatagctgatgatcttagcgccctttatagattctacaacctgcttagtaa-------caaacaatcacaaactcttcttatggttgtttcatttgaaa |
36642350 |
T |
|
| Q |
230 |
ttatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataactacctgcttaagattaaaacaacctgggtaattt |
329 |
Q |
| |
|
|||||||||| ||||| || |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| | | ||||| | |
|
|
| T |
36642351 |
ctatctaagctgagattctcaaaag---aattaccacactcagctcccttatggattttaaataacaacctgcttaagattaaaacaatccgagtaatct |
36642447 |
T |
|
| Q |
330 |
gttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttc |
429 |
Q |
| |
|
|| | |||||||||||| || |||| || |||||||| ||||||||| |||||||||| ||||||||||||| ||| |||| |||||||| | ||||| |
|
|
| T |
36642448 |
gtaaagatgttaacttccgcagacggtgagttttgtcgcaagaagtctactattccattaggtatggcaggtggttccaaacgagctttaaatgtctttc |
36642547 |
T |
|
| Q |
430 |
ttaacttatcggcttctttacttgacttagcagcaactttctttaacatggcatctttcattaatagaaataaatgtc---catgaagtggtatcagttt |
526 |
Q |
| |
|
|||||||| | |||||||||||||| | |||||| |||||||||||| ||||||| ||| | | || || || |||||| |||||||| || |
|
|
| T |
36642548 |
ttaacttagcaacttctttacttgacatggcagcatctttctttaacaaggcatctacgattgagcgggatgaagatccatcatgaaatggtatcatttc |
36642647 |
T |
|
| Q |
527 |
tacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaattggggtgaatta |
619 |
Q |
| |
|
|| | |||||||| ||||||||||||||||| | |||||||||| | ||||||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
36642648 |
tattaccaatgacttcaagttacataaagaatgtagcttaaccttcgataaatcaggaactatggagagaatctaagcaatgagggtgaatta |
36642740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 135 - 652
Target Start/End: Complemental strand, 36910978 - 36910463
Alignment:
| Q |
135 |
gttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaattatc |
234 |
Q |
| |
|
||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
36910978 |
gttgataatcttcgcgccctttatagattctacaacctgtttagtaa-------caaccaattacaaactcttcttatggttgtgtcatttaaaattatc |
36910886 |
T |
|
| Q |
235 |
taagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataacta----cctgcttaagattaaaacaacctgggtaatttg |
330 |
Q |
| |
|
|||||| ||||| || ||||| |||||| |||||| |||| |||||||||||||| ||||||||||||||||| || ||||| || |
|
|
| T |
36910885 |
taagctcagattctcaacaaaa-aattaacacactcagctcccatatggtttttaaataactagctacctgcttaagattaaaataaataaagtaatctg |
36910787 |
T |
|
| Q |
331 |
ttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttct |
430 |
Q |
| |
|
|| ||||||||||||| || || | | |||||||| ||||||||||||||||||||||||||||||||||| ||| | || | |||||| ||||| | |
|
|
| T |
36910786 |
ttgtgatgttaacttccgctgagggcgagttttgtcgcaagaagtcaactattccatcaggtatggcaggtagttccatacgtcttttaaatgccttgca |
36910687 |
T |
|
| Q |
431 |
taacttatcggcttctttacttgacttagcagcaactttctttaacatggcatctttcattaatagaaataaatgtccat---gaagtggtatcagtttt |
527 |
Q |
| |
|
||||||| ||||| | |||||| |||||| |||| || ||||| ||| ||| ||| || | |||||| ||||| |||||||||||| | | |
|
|
| T |
36910686 |
taacttaagaagttcttcatgtgacttggcagcagcttttttatacatgacatttttgattgattgggataaatatccatcctgaagtggtatcaactct |
36910587 |
T |
|
| Q |
528 |
acttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaattggggtgaattaggattagt |
627 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||| ||| || ||| ||||||| || |
|
|
| T |
36910586 |
acttccaatgacttcaagttacataaagaatggaatttaacctccaataaatcaggaactaaggacagaatctaagaaatgaggatgagttaggatcag- |
36910488 |
T |
|
| Q |
628 |
tttatgcaactcaaatgaatattaa |
652 |
Q |
| |
|
||||||||| |||| ||||| |||| |
|
|
| T |
36910487 |
tttatgcaagtcaattgaattttaa |
36910463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 130 - 652
Target Start/End: Original strand, 36664529 - 36665051
Alignment:
| Q |
130 |
cgatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggct-gtttcatttaaa |
228 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||| | |||| |||| || |
|
|
| T |
36664529 |
cgatagctgatgatcttcgcaccctttatagattctgcaacctgtttagtaa-------cagccaatcacaaactcttcatatggtttgtttgatttcaa |
36664621 |
T |
|
| Q |
229 |
attatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataactacctgcttaagatt-aaaacaacctgggtaat |
327 |
Q |
| |
|
|| |||| || ||||| || ||||||||||| ||||||||| |||||||||||| ||||||||||| |||| |||||| | | | ||| |
|
|
| T |
36664622 |
atatactaaactcagattctcaaaaa---aattaccacacacagctcccttaagatttttaaatacctacctgcttaggatttaaaacatgc-gagaaat |
36664717 |
T |
|
| Q |
328 |
ttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctt |
427 |
Q |
| |
|
||| ||||||||||||| || || | | |||||||| |||||||||||| || || |||||||||||| || ||| |||| |||||| || ||||| |
|
|
| T |
36664718 |
ctgtggtgatgttaacttccgctgatggcgagttttgtcgcaagaagtcaaccataccgtcaggtatggcacgtggttccaaacgtgctttgaatgcctt |
36664817 |
T |
|
| Q |
428 |
tcttaacttatcggcttctttacttgacttagcagcaactttctttaacatggcatctttcattaatagaaataaatgtccatg---------aagtggt |
518 |
Q |
| |
|
|||||||||| | ||||||||| ||||| |||||| ||||||||||||||||| ||| ||| || | |||||| ||||| || |||| |
|
|
| T |
36664818 |
tcttaacttagcaacttctttacgagacttggcagcagctttctttaacatggcagcttcgattgatcggaataaaaatccatcgcggtgaataaatggt |
36664917 |
T |
|
| Q |
519 |
atcagttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaattggggtgaatt |
618 |
Q |
| |
|
| || || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
36664918 |
accaattctacttccaatgacttcaagttacataacgaagggagcttaacctccaataaatcaggaactaaggagagaatctaagcaataagggtaaatt |
36665017 |
T |
|
| Q |
619 |
aggattagttttatgcaactcaaatgaatattaa |
652 |
Q |
| |
|
| ||| ||| |||||||| |||| ||||| |||| |
|
|
| T |
36665018 |
aagatcagtcttatgcaagtcaattgaattttaa |
36665051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 131 - 489
Target Start/End: Original strand, 36635595 - 36635947
Alignment:
| Q |
131 |
gatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaat |
230 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
36635595 |
gatagttgataaccttcgcaccctttatagattcttcaacctgtttagcag-------caaccaatcacaaactctt---atcgttgtttcatttaaaat |
36635684 |
T |
|
| Q |
231 |
tatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttt-----taaataactacctgcttaagattaaaacaacctgggta |
325 |
Q |
| |
|
|||||||||||||||| || ||| | |||| | | | ||||||||||| |||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
36635685 |
tatctaagcttagattctcaaaaaaaaaat-atcacattcagtttccttatgatttgatttataaataactacctgcttaagattaaaacaagccgggta |
36635783 |
T |
|
| Q |
326 |
atttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgcc |
425 |
Q |
| |
|
||||||| ||||||||||||| || || | |||||| | |||||| |||||||||||||||||||||| |||| ||| |||| ||||||||| ||| |
|
|
| T |
36635784 |
atttgttgtgatgttaacttcggcggattgcgagttttgacgcaagaattcaactattccatcaggtatgggaggtggttccaaacgtgctttaaaagcc |
36635883 |
T |
|
| Q |
426 |
tttcttaacttatcggcttctttacttgacttagcagcaactttctttaacatggcatctttca |
489 |
Q |
| |
|
||||||||||| | |||||||||| |||||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
36635884 |
tttcttaacttggcagcttctttacgtgacttggcagcagctttctttaacatggcttctttca |
36635947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 131 - 484
Target Start/End: Complemental strand, 18361441 - 18361100
Alignment:
| Q |
131 |
gatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaat |
230 |
Q |
| |
|
|||| |||||||| || |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
18361441 |
gataattgataatatttgcaccctttatagattcctcaacctgtttagtaat-------aaccaatcacaaa---ttcttatggttgtttcatt--aaat |
18361354 |
T |
|
| Q |
231 |
tatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttg |
330 |
Q |
| |
|
|| ||||||| ||||| ||||| |||||| ||||||||||| |||| |||||||||| |||||||||||||| ||| | |||| || |
|
|
| T |
18361353 |
tagctaagctgagattcgagaaaaaaaaattaacacactcagctcccttatggttttcaaataactacttgcttaagattaaatcaattcgaataatctg |
18361254 |
T |
|
| Q |
331 |
ttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttct |
430 |
Q |
| |
|
||| ||||||||||| |||| || || |||| | ||||||||||||||||||||||||||||| || | || |||| ||||| ||| ||||||| |
|
|
| T |
18361253 |
ttaagatgttaactttggccgtcggtgaatttttttgcaagaagtcaactattccatcaggtatgggagatggtttcaaacttgcttcaaatgcctttcc |
18361154 |
T |
|
| Q |
431 |
taacttatcggcttctttacttgacttagcagcaactttctttaacatggcatc |
484 |
Q |
| |
|
||||||| | |||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
18361153 |
taacttagcagcttctttacgtgacttggcagcaactttctttaacatggcatc |
18361100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 272 - 483
Target Start/End: Complemental strand, 35969610 - 35969399
Alignment:
| Q |
272 |
gctcccttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaag |
371 |
Q |
| |
|
|||| |||||| |||| |||||||||||| |||||||||||||||| || |||| |||||| |||||||||||| ||| || || |||||||| |||| |
|
|
| T |
35969610 |
gctcacttatggttttcaaataactacctccttaagattaaaacaatttgagtaaattgttaggatgttaacttccgccagcggtgagttttgtcgcaag |
35969511 |
T |
|
| Q |
372 |
aagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttcttaacttatcggcttctttacttgacttagcagcaactttct |
471 |
Q |
| |
|
|| |||||||||||||| ||||||| ||| ||| |||||||||||||| || ||| |||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
35969510 |
aaatcaactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttactcgacttggcagcaactttct |
35969411 |
T |
|
| Q |
472 |
ttaacatggcat |
483 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35969410 |
ttaacatggcat |
35969399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 72 - 606
Target Start/End: Complemental strand, 18365703 - 18365174
Alignment:
| Q |
72 |
agcagactcagcacaagcaggtgcaacaaagaaagaggcaggcgtggtaacttgtgagcgatagttgataatcttctcaccctttatagattcttcaacc |
171 |
Q |
| |
|
||||||||||||| |||||||||| ||| || ||| ||||| || | || |||||| | ||| || | |||||| | |||||||| |||||||||||| |
|
|
| T |
18365703 |
agcagactcagcagaagcaggtgcgacagaggaaggggcagacgcagaaaattgtgaatggtagctggtcatcttcgctccctttatggattcttcaacc |
18365604 |
T |
|
| Q |
172 |
tgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaattatctaagcttagattgtcnnnnnnntaattaccacacttg |
271 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||| |||| || ||||| ||||| ||||| || |||||||||||| | |
|
|
| T |
18365603 |
tgtttagtaa-------caaccaatcacaaactcttcttatggttgttaaatttgaatttatcaaagctcagattctcaaaaaaa-aattaccacactcg |
18365512 |
T |
|
| Q |
272 |
gctcccttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaag |
371 |
Q |
| |
|
| | ||||||| ||||||||||||||||||||| | ||||||| | ||| |||| ||||||||||| | || | | |||||||| || | |
|
|
| T |
18365511 |
gttaccttatggtttttaaataactacctgcttgatattaaaatttctcatgtacgttgtgttgatgttaactgtcgttgaaggcgagttttgtcgcagg |
18365412 |
T |
|
| Q |
372 |
aagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttcttaacttatcggcttctttacttgacttagcagcaactttct |
471 |
Q |
| |
|
||||||||||||||||||||||||| |||| || ||||| || ||||| ||||| |||||||| | ||||||| | |||||| | ||| | || | |
|
|
| T |
18365411 |
aagtcaactattccatcaggtatgggaggtggttgcaaaccagcattaaatgccttgtttaacttagcagcttcttcaggtgacttggtagctgccttgt |
18365312 |
T |
|
| Q |
472 |
ttaacatggcatctttcattaat---agaaataaatgtccatgaagtggtatcagttttacttccaatgacctcaagttacataaagaagggagcttaac |
568 |
Q |
| |
|
|||||||| |||| ||| || | |||||| | || || ||||| ||||| ||||||||||||| |||||||||| ||||||| || |||||| |
|
|
| T |
18365311 |
ttaacatgttctcttccatcaaatcaataaataatcgataataaactggtaccagttgtacttccaatgacttcaagttacacaaagaagtgaacttaac |
18365212 |
T |
|
| Q |
569 |
ctccaataaatcaggaaccaaggagagaatctaagcaa |
606 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18365211 |
ctccaataaatcaggaacaaaggagagaatctaagcaa |
18365174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 72 - 606
Target Start/End: Original strand, 36597222 - 36597751
Alignment:
| Q |
72 |
agcagactcagcacaagcaggtgcaacaaagaaagaggcaggcgtggtaacttgtgagcgatagttgataatcttctcaccctttatagattcttcaacc |
171 |
Q |
| |
|
||||||||||||| |||||||||| ||| || ||| ||||| || | || |||||| | ||| || | |||||| | |||||||| |||||||||||| |
|
|
| T |
36597222 |
agcagactcagcagaagcaggtgcgacagaggaaggggcagacgcagaaaattgtgaatggtagctggtcatcttcgctccctttatggattcttcaacc |
36597321 |
T |
|
| Q |
172 |
tgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaattatctaagcttagattgtcnnnnnnntaattaccacacttg |
271 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||| |||| || ||||| ||||| ||||| || |||||||||||| | |
|
|
| T |
36597322 |
tgtttagtaa-------caaccaatcacaaactcttcttatggttgttaaatttgaatttatcaaagctcagattctcaaaaaa--aattaccacactcg |
36597412 |
T |
|
| Q |
272 |
gctcccttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaag |
371 |
Q |
| |
|
| | ||||||| ||||||||||||||||||||| | ||||||| | ||| |||| ||||||||||| | || | | |||||||| || | |
|
|
| T |
36597413 |
gttaccttatggtttttaaataactacctgcttgatattaaaatttctcatgtacgttgtgttgatgttaactgtcgttgaaggcgagttttgtcgcagg |
36597512 |
T |
|
| Q |
372 |
aagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttcttaactt-atcggcttctttacttgacttagcagcaactttc |
470 |
Q |
| |
|
||||||||||||||||||||||||| |||| || ||||| || ||||| ||||| ||||||| | | ||||||| | |||||| | ||| | || |
|
|
| T |
36597513 |
aagtcaactattccatcaggtatgggaggtggttgcaaaccagcattaaatgccttgtttaactttagcagcttcttcaggtgacttggtagctgccttg |
36597612 |
T |
|
| Q |
471 |
tttaacatggcatctttcattaat---agaaataaatgtccatgaagtggtatcagttttacttccaatgacctcaagttacataaagaagggagcttaa |
567 |
Q |
| |
|
||||||||| |||| ||| || | |||||| | || || ||||| ||||| ||||||||||||| |||||||||| ||||||| || ||||| |
|
|
| T |
36597613 |
tttaacatgttctcttccatcaaatcaataaataatcgataataaactggtaccagttgtacttccaatgacttcaagttacacaaagaagtgaacttaa |
36597712 |
T |
|
| Q |
568 |
cctccaataaatcaggaaccaaggagagaatctaagcaa |
606 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36597713 |
cctccaataaatcaggaacaaaggagagaatctaagcaa |
36597751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 131 - 484
Target Start/End: Original strand, 36601486 - 36601829
Alignment:
| Q |
131 |
gatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaat |
230 |
Q |
| |
|
|||| |||||||| || |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
36601486 |
gataattgataatatttgcaccctttatagattcctcaacctgtttagtaat-------aaccaatcacaaa---ttcttatggttgtttcatt--aaat |
36601573 |
T |
|
| Q |
231 |
tatctaagcttagattgtcnnnnnnntaattac-cacacttggctcccttatgatttttaaataactacctgcttaagattaaaacaacctgggtaattt |
329 |
Q |
| |
|
|| ||||||| ||||| ||||| |||||| ||||||||||| |||| |||||||||| |||||||||||||| ||| | |||| | |
|
|
| T |
36601574 |
tagctaagctgagattcgagaaaaaaaaattaaacacactcagctcccttatggttttcaaataactacttgcttaagattaaatcaattcgaataatct |
36601673 |
T |
|
| Q |
330 |
gttatgatgttaacttcagccgacgatgggttttgtca-caagaagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgccttt |
428 |
Q |
| |
|
|||| ||||||||||| |||| || || |||| | ||||||||||||||||||||||||||||| || | || |||| ||||| ||| |||||| |
|
|
| T |
36601674 |
gttaagatgttaactttggccgtcggtgaattttttttgcaagaagtcaactattccatcaggtatgggagatggtttcaaacttgcttcaaatgccttt |
36601773 |
T |
|
| Q |
429 |
cttaacttatcggcttctttacttgacttagcagcaactttctttaacatggcatc |
484 |
Q |
| |
|
| ||||||| | |||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
36601774 |
cctaacttagcagcttctttacgtgacttggcagcaactttctttaacatggcatc |
36601829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 130 - 607
Target Start/End: Complemental strand, 18084480 - 18084007
Alignment:
| Q |
130 |
cgatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggct-gtttcatttaaa |
228 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||| | |||| |||| || |
|
|
| T |
18084480 |
cgatagctgatgatcttcgcaccctttatagattctgcaacctgtttagtaa-------cagccaatcacaaactcttcatatggtttgtttgatttcaa |
18084388 |
T |
|
| Q |
229 |
attatctaagcttagattgtcnnnnnnntaattaccacacttggctcccttatgatttttaaataactacctgcttaagatt-aaaacaacctgggtaat |
327 |
Q |
| |
|
|| |||| || ||||| || ||||||||||| ||||||||| |||||||||||| ||||||||||| |||| |||||| | | | ||| |
|
|
| T |
18084387 |
atatactaaactcagattctcaaaaa---aattaccacacacagctcccttaagatttttaaatacctacctgcttaggatttaaaacatgc-gagaaat |
18084292 |
T |
|
| Q |
328 |
ttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctt |
427 |
Q |
| |
|
||| ||||||||||||| || || | | |||||||| |||||||||||| || || |||||||||||| || ||| |||| |||||| || ||||| |
|
|
| T |
18084291 |
ctgtggtgatgttaacttccgctgatggcgagttttgtcgcaagaagtcaaccataccgtcaggtatggcacgtggttccaaacgtgctttgaatgcctt |
18084192 |
T |
|
| Q |
428 |
tcttaacttatcggcttctttacttgacttagcagcaactttctttaacatggcatctttcattaatagaaataaatgtccatg---------aagtggt |
518 |
Q |
| |
|
|||||||||| | || |||||| |||| |||||| || ||||||||||||| ||| ||| || | | |||| ||||| || |||| |
|
|
| T |
18084191 |
tcttaacttagcaact-ctttacgagactg-gcagcagntt-ctttaacatggcagcttcgattgatcgga-taaaaatccatcgcggtgaataaatggt |
18084096 |
T |
|
| Q |
519 |
atcagttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaat |
607 |
Q |
| |
|
| || || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
18084095 |
accaattctacttccaatgacttcaagttacataacgaagggagcttaacctccaataaatcaggaactaaggacagaatctaagcaat |
18084007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 524 - 607
Target Start/End: Original strand, 36627264 - 36627347
Alignment:
| Q |
524 |
ttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaat |
607 |
Q |
| |
|
||||| ||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36627264 |
ttttatttccattgacttcaagttaccgaaagaagggagctcaacctccaataaatcaggaactaaggagagaatctaagcaat |
36627347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 541 - 607
Target Start/End: Original strand, 36616606 - 36616672
Alignment:
| Q |
541 |
tcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaat |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
36616606 |
tcaagttacataaagaagggagcttaacctccaatagatcaggaactaaggacagaatctaagcaat |
36616672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 718 - 766
Target Start/End: Complemental strand, 36630157 - 36630109
Alignment:
| Q |
718 |
catgacaaggtacctgaagagtagttgaattgactgtcaataattctac |
766 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36630157 |
catgacaaggtacctcaagagtagttgaattgactgtcaataattctac |
36630109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 36612429 - 36612492
Alignment:
| Q |
543 |
aagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaa |
606 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
36612429 |
aagttgcacaaagaagggagcttaacctctaataaatcaggaattaaggagagaatctaagcaa |
36612492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 521 - 608
Target Start/End: Original strand, 36635985 - 36636072
Alignment:
| Q |
521 |
cagttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaatt |
608 |
Q |
| |
|
|||||||| ||||| ||| |||||||||| |||||||| ||||||||||| | |||||||||||| || |||||||||||| ||||| |
|
|
| T |
36635985 |
cagttttatttccatagacttcaagttacacaaagaaggcagcttaacctctagtaaatcaggaactaatgagagaatctaaacaatt |
36636072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 524 - 607
Target Start/End: Complemental strand, 28125847 - 28125764
Alignment:
| Q |
524 |
ttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaat |
607 |
Q |
| |
|
||||| ||||| ||| |||||| ||| |||||| ||||||||||||| | |||||||||||| ||||||||||||||| |||| |
|
|
| T |
28125847 |
ttttatttccatcgacttcaagtaacacaaagaacggagcttaacctctagtaaatcaggaactaaggagagaatctaaacaat |
28125764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 524 - 602
Target Start/End: Complemental strand, 35969355 - 35969277
Alignment:
| Q |
524 |
ttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaa |
602 |
Q |
| |
|
||||| ||||| ||| |||||||||| |||||| |||||| |||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
35969355 |
ttttatttccatcgacttcaagttacacaaagaatggagctcaacctctaatatatcaggaactaaggagagaatctaa |
35969277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 541 - 607
Target Start/End: Original strand, 55965904 - 55965970
Alignment:
| Q |
541 |
tcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaat |
607 |
Q |
| |
|
|||||||||| ||||||||||| || | ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
55965904 |
tcaagttacacaaagaagggagtttgagctccaataaattgggaactaaggagagaatctaagcaat |
55965970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 718 - 766
Target Start/End: Complemental strand, 36910402 - 36910354
Alignment:
| Q |
718 |
catgacaaggtacctgaagagtagttgaattgactgtcaataattctac |
766 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
36910402 |
catgacaaggtacctgaagagtagttgaagtgactgccaatgattctac |
36910354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 521 - 600
Target Start/End: Original strand, 36655968 - 36656047
Alignment:
| Q |
521 |
cagttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatct |
600 |
Q |
| |
|
||||| || ||||| |||| |||||||||| |||||||| | ||||| || |||||||| |||||| ||||||||||||| |
|
|
| T |
36655968 |
cagttctatttccagtgacttcaagttacacaaagaaggtatcttaaacttcaataaattaggaactaaggagagaatct |
36656047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 718 - 766
Target Start/End: Complemental strand, 18365073 - 18365025
Alignment:
| Q |
718 |
catgacaaggtacctgaagagtagttgaattgactgtcaataattctac |
766 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
18365073 |
catgacaaggaacctgaagagtagttgaagtgactgccaatgattctac |
18365025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 718 - 766
Target Start/End: Original strand, 36597852 - 36597900
Alignment:
| Q |
718 |
catgacaaggtacctgaagagtagttgaattgactgtcaataattctac |
766 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
36597852 |
catgacaaggaacctgaagagtagttgaagtgactgccaatgattctac |
36597900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Complemental strand, 29677505 - 29677446
Alignment:
| Q |
541 |
tcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatct |
600 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
29677505 |
tcaagttacacaaagagtggagcttaacctctggtaaatcaggaactaaggagagaatct |
29677446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 601
Target Start/End: Complemental strand, 43942029 - 43941938
Alignment:
| Q |
510 |
tgaagtggtatcagttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatcta |
601 |
Q |
| |
|
||||||||| || ||||| ||||| ||| | |||||||| ||||||||||||||||| || |||||| |||||| || | |||||||||| |
|
|
| T |
43942029 |
tgaagtggttccaattttatttccatagactttaagttacacaaagaagggagcttaacttctaataaaccaggaatcatgtagagaatcta |
43941938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 3e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 277 - 652
Target Start/End: Original strand, 42601686 - 42602064
Alignment:
| Q |
277 |
cttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtc |
376 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| ||| ||||||| ||||| ||| |||||||| |||||| |||||||| |||||| || |
|
|
| T |
42601686 |
cttatggtttttaaataactacctgcttaagatcaaaagaactcgggtaatctgttaagattttaacttccaccgacggcaagttttgtcgcaagaaatc |
42601785 |
T |
|
| Q |
377 |
aactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttcttaacttatcggcttctttacttgacttagcagcaactttctttaac |
476 |
Q |
| |
|
|||||||||||| ||||||| |||| || |||||| |||||||| |||||||||||||| | |||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
42601786 |
aactattccatcgggtatgggaggtggttttaaacccgctttaaattcctttcttaacttagcagcttctttacgtgacttggcagcagctttctttaac |
42601885 |
T |
|
| Q |
477 |
atggcatctttcattaatagaaataaatgtccat---gaagtggtatcagttttacttccaatgacctcaagttacataaagaagggagcttaacctcca |
573 |
Q |
| |
|
||||| |||| |||||||| ||||| | || |||||||||||||||||||||||||| || |||||||||| || |||| |||||||||||||| |
|
|
| T |
42601886 |
atggcctcttccattaatacgaataatgaactataacgaagtggtatcagttttacttccaataacttcaagttacacaacgaagtgagcttaacctcca |
42601985 |
T |
|
| Q |
574 |
ataaatcaggaaccaaggagagaatctaagcaattggggtgaattaggattagttttatgcaactcaaatgaatattaa |
652 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| |||||||||||||| |||||||||||| |||| ||||| |||| |
|
|
| T |
42601986 |
ataaatcaggaactaaggagagaatctaagaaatgagggtgaattaggatcagttttatgcaagtcaactgaattttaa |
42602064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 42601610 - 42601673
Alignment:
| Q |
182 |
ttagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaattatctaagcttagat |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
42601610 |
ttagtaacaaccaatcacaaactcttcttatggttgtttcatttgaaattatctaagctcagat |
42601673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 277 - 652
Target Start/End: Complemental strand, 35337047 - 35336662
Alignment:
| Q |
277 |
cttatgatttttaaataactacctgcttaagattaaaacaacctgggtaatttgttatgatgttaacttcagccgacgatgggttttgtcacaagaagtc |
376 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||||||| |||| | ||| |||||| |||||||||||| ||||||| || ||||||| ||||||||| |
|
|
| T |
35337047 |
cttatggtttttaaacaactacctgcttaatattaaaataacccgtgtactttgttgtgatgttaactttcgccgacggtgagttttgttgcaagaagtc |
35336948 |
T |
|
| Q |
377 |
aactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttcttaacttatcggcttctttacttgacttagcagcaactttctttaac |
476 |
Q |
| |
|
|||||||||||||||||||| |||| | |||||||||||||| | |||||||||||| | ||||| |||| ||||| ||||| ||||||||||| |
|
|
| T |
35336947 |
aactattccatcaggtatgggaggtggtctcaaacctgctttaaatgtctttcttaactttgcagcttcattacaggacttggcagccgctttctttaac |
35336848 |
T |
|
| Q |
477 |
atggcatctttcattaatagaaataaatgtc---catgaagtggtatcagttttacttccaatgacctcaagttacataaagaagggagcttaacctcca |
573 |
Q |
| |
|
||||||| || ||||| | | ||| ||| || || ||| |||| || || |||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
35336847 |
atggcattttccattatacggagtaatggtcgataatcaaatggcatcatttctatttccaatgacttcaagttacacaaagaagggagcttaacctcca |
35336748 |
T |
|
| Q |
574 |
ataaatcaggaaccaaggagagaatctaagcaatt-------ggggtgaattaggattagttttatgcaactcaaatgaatattaa |
652 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| |||||||||||||| | |||||||||| |||| | |||||||| |
|
|
| T |
35336747 |
ataaatcaggaactaaggagagaacctaagcaattaaaaatgagggtgaattaggatcatttttatgcaagtcaatttaatattaa |
35336662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 607
Target Start/End: Original strand, 27700900 - 27700983
Alignment:
| Q |
524 |
ttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaat |
607 |
Q |
| |
|
|||||||| || ||| ||||||||||||| |||| | || ||||| ||||||||||||||| | |||||||| ||||||||| |
|
|
| T |
27700900 |
ttttactttcagcgacttcaagttacataaggaagaaaactcaaccttcaataaatcaggaactacggagagaacctaagcaat |
27700983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 524 - 605
Target Start/End: Original strand, 33839348 - 33839429
Alignment:
| Q |
524 |
ttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagca |
605 |
Q |
| |
|
||||| ||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33839348 |
ttttatttccaccgacttcaagttacacaaagaaggaagcttaacctccaataaatcaggaactaaggagagaatctaagca |
33839429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 368 - 481
Target Start/End: Original strand, 33839177 - 33839290
Alignment:
| Q |
368 |
caagaagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttcttaacttatcggcttctttacttgacttagcagcaact |
467 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||| |||||||| || |||| |||||| |||||||| | |||||| |||||| || |
|
|
| T |
33839177 |
caagaagtccactattccatcaggtatggaaggtggttctaaacccgctttaaatgcttttcgtaacttggaagcttctttgcgtgactttgcagcagct |
33839276 |
T |
|
| Q |
468 |
ttctttaacatggc |
481 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33839277 |
ttctttaacatggc |
33839290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 524 - 605
Target Start/End: Original strand, 33843255 - 33843336
Alignment:
| Q |
524 |
ttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagca |
605 |
Q |
| |
|
||||| ||||| ||| ||||||||| |||||||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
33843255 |
ttttatttccatcgacttcaagttactcaaagaaggaagcttaacctccaataaattgggaactaaggagagaatctaagca |
33843336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 7119870 - 7119797
Alignment:
| Q |
534 |
aatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaat |
607 |
Q |
| |
|
|||||| |||||||||| || ||||| |||||||||| ||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
7119870 |
aatgacttcaagttacacaaggaaggtagcttaaccttcaataaatcaggaactaaggagagaacctaagcaat |
7119797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 607
Target Start/End: Original strand, 777253 - 777336
Alignment:
| Q |
524 |
ttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaat |
607 |
Q |
| |
|
||||| || ||||||| |||||||||| || ||| ||| | ||| | ||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
777253 |
ttttattttcaatgacttcaagttacacaagtaagagagttcaacgttcaataaatcaggaaccaaggaaagaacctaagcaat |
777336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 512 - 603
Target Start/End: Original strand, 19657369 - 19657460
Alignment:
| Q |
512 |
aagtggtatcagttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaag |
603 |
Q |
| |
|
||||||| |||||||| ||||| ||| | ||||| || |||||||||||||||| ||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
19657369 |
aagtggttccagttttatttccatagactttaagttgcacaaagaagggagcttaagctctaataattcaggaactaaggagagaatctaag |
19657460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 512 - 603
Target Start/End: Original strand, 19674213 - 19674304
Alignment:
| Q |
512 |
aagtggtatcagttttacttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaag |
603 |
Q |
| |
|
||||||| |||||||| ||||| ||| | ||||| || |||||||||||||||| ||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
19674213 |
aagtggttccagttttatttccatagactttaagttgcacaaagaagggagcttaagctctaataattcaggaactaaggagagaatctaag |
19674304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 530 - 596
Target Start/End: Original strand, 43429250 - 43429316
Alignment:
| Q |
530 |
ttccaatgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagaga |
596 |
Q |
| |
|
||||||| || |||||||||| ||||||| || |||||||||| |||||||||||| ||||||||| |
|
|
| T |
43429250 |
ttccaataacttcaagttacacaaagaagagaacttaacctccgataaatcaggaattaaggagaga |
43429316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 607
Target Start/End: Complemental strand, 32414697 - 32414626
Alignment:
| Q |
536 |
tgacctcaagttacataaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaat |
607 |
Q |
| |
|
|||| |||||||||| || ||||| | ||| |||| ||||||||||||||||||||| |||| |||| |||| |
|
|
| T |
32414697 |
tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat |
32414626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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