View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13125_low_23 (Length: 341)

Name: NF13125_low_23
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13125_low_23
NF13125_low_23
[»] chr6 (5 HSPs)
chr6 (12-341)||(30521281-30521609)
chr6 (200-341)||(10795818-10795958)
chr6 (308-341)||(10791687-10791720)
chr6 (281-337)||(11333273-11333329)
chr6 (307-341)||(8875728-8875762)
[»] chr8 (9 HSPs)
chr8 (181-341)||(37682096-37682255)
chr8 (181-341)||(40054351-40054510)
chr8 (183-341)||(41841064-41841220)
chr8 (181-341)||(37679794-37679952)
chr8 (307-341)||(44879022-44879056)
chr8 (307-341)||(44880865-44880899)
chr8 (309-341)||(44582892-44582924)
chr8 (306-341)||(10944432-10944467)
chr8 (307-337)||(42092063-42092093)
[»] chr4 (9 HSPs)
chr4 (181-341)||(3461052-3461210)
chr4 (181-341)||(11652302-11652460)
chr4 (181-341)||(21503717-21503875)
chr4 (306-341)||(26984700-26984735)
chr4 (306-341)||(26998773-26998808)
chr4 (307-341)||(49106563-49106597)
chr4 (308-341)||(49108668-49108701)
chr4 (308-341)||(50077234-50077267)
chr4 (181-234)||(26984578-26984630)
[»] chr1 (18 HSPs)
chr1 (181-341)||(33988109-33988267)
chr1 (181-341)||(14708617-14708776)
chr1 (281-341)||(14654348-14654408)
chr1 (281-341)||(14664139-14664199)
chr1 (281-341)||(14669717-14669777)
chr1 (281-341)||(14681638-14681698)
chr1 (281-341)||(14683789-14683849)
chr1 (281-341)||(14706127-14706187)
chr1 (306-341)||(14652564-14652599)
chr1 (306-341)||(14662355-14662390)
chr1 (306-341)||(14674520-14674555)
chr1 (306-341)||(14676671-14676706)
chr1 (306-341)||(14679898-14679933)
chr1 (308-341)||(28366234-28366267)
chr1 (308-341)||(38175565-38175598)
chr1 (281-341)||(11872489-11872549)
chr1 (281-341)||(14716330-14716390)
chr1 (307-337)||(37422212-37422242)
[»] scaffold0549 (1 HSPs)
scaffold0549 (200-271)||(5504-5575)
[»] chr2 (13 HSPs)
chr2 (200-267)||(9026899-9026966)
chr2 (200-271)||(9008130-9008201)
chr2 (181-341)||(19232309-19232467)
chr2 (185-341)||(43850088-43850243)
chr2 (281-341)||(2841025-2841085)
chr2 (306-341)||(30734027-30734062)
chr2 (306-341)||(32918119-32918154)
chr2 (307-341)||(9032092-9032126)
chr2 (303-337)||(10763908-10763942)
chr2 (281-341)||(30732047-30732107)
chr2 (200-270)||(8973422-8973492)
chr2 (313-341)||(9008060-9008088)
chr2 (313-341)||(9026825-9026853)
[»] chr5 (4 HSPs)
chr5 (181-341)||(3643679-3643837)
chr5 (181-341)||(7525007-7525166)
chr5 (307-341)||(1716486-1716520)
chr5 (307-341)||(4103284-4103318)
[»] chr7 (1 HSPs)
chr7 (201-260)||(8128610-8128671)


Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 341
Target Start/End: Complemental strand, 30521609 - 30521281
Alignment:
Q  12 atgaatattgaatactatgtatattaacaagtgaacactttttagcttaaagatatgctgtctatttttcttgatttgcgatagataacattctgtaaat 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30521609 atgagtattgaatactatgtatattaacaagtgaacactttttagcttaaagatatgctgtctatttttcttgatttgcgatagataacattctgtaaat 30521510  T
Q  112 caacaaatgatgtaaaataaaagtctaaaacatgatagcgaatgttatagaaatcttgaacttggtttgggtggggtgcgccaggccgatgcaatagtgc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30521509 caacaaatgatgtaaaataaaagtctaaaacatgatagcgaatgttatagaaatcttgaacttggtttgggtggggtgcgccaggccaatgcaatagtgc 30521410  T
Q  212 aaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnntaaattgaatatcgtgtgaggcgatgatccaca 311  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||| ||||||    
T  30521409 aaagcaaagacgacacttgagagacccaatagcaagctatagtagtggactctccccctc-aaaaaataaattgaatatcgtgtgaggcgatggtccaca 30521311  T
Q  312 tatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||    
T  30521310 tatcagatattaaactgataagaacagata 30521281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 341
Target Start/End: Original strand, 10795818 - 10795958
Alignment:
Q  200 atgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnntaaattgaatatcgtgtgagg 299  Q
    |||||||||||||| ||| |  |||||| |||||  || ||||||||||||||| |||||  ||||||||||       ||| || ||||||||||||      
T  10795818 atgcaatagtgcaacgcacaagcgacacatgagaagcctaatagcaagctattgaagtggcttctccccctcaaaaaagtaattt-aatatcgtgtgacc 10795916  T
Q  300 cgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |  ||   ||||||||||||||||||||||||||||||||||    
T  10795917 cattgggtcacatatcagatattaaactgataagaacagata 10795958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 10791687 - 10791720
Alignment:
Q  308 cacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||    
T  10791687 cacatatcagatattaaactgataagaacagata 10791720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 11333329 - 11333273
Alignment:
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaaca 337  Q
    |||| ||||||||||||  || ||  |||||||||||||||||||||||||||||||    
T  11333329 aatttaatatcgtgtgatccgttggaccacatatcagatattaaactgataagaaca 11333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 8875762 - 8875728
Alignment:
Q  307 ccacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||| |||||||||||||||    
T  8875762 ccacatatcagatattaaattgataagaacagata 8875728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 37682255 - 37682096
Alignment:
Q  181 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnnta 280  Q
    ||||||| ||||||| || |||||||||||||| | ||||| ||||||||||||||| |||||||||||||| | ||||||||||  |||         |    
T  37682255 ggtggggcgcgccagaccaatgcaatagtgcaacgtaaagatgacacttgagagacctaatagcaagctattttggtggactctcatcct-aaaaaaaca 37682157  T
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| |||||||||||   |  ||  |||||||||||||||||||||||||||||||||||    
T  37682156 aatttaatatcgtgtggaccattggcccacatatcagatattaaactgataagaacagata 37682096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 40054510 - 40054351
Alignment:
Q  181 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnnta 280  Q
    |||||||||||||| ||  ||||||||||||||  || |  |||||||| |||  |||||||||||||||||| ||||| |||||||||||       |     
T  40054510 ggtggggtgcgccaagcttatgcaatagtgcaacacataagcgacacttaagaagcccaatagcaagctattgaagtggcctctccccctcaaaaaagt- 40054412  T
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| |||||||| |||  |  ||  |||||||||||||||||||||||||||||||||||    
T  40054411 aatttaatatcgtatgacccattgggccacatatcagatattaaactgataagaacagata 40054351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 183 - 341
Target Start/End: Original strand, 41841064 - 41841220
Alignment:
Q  183 tggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnntaaa 282  Q
    ||||||||||||| || ||||||||||||||  || || ||||||| ||||  ||||||||||||||||||  ||||  ||||||| ||       |||     
T  41841064 tggggtgcgccagccc-atgcaatagtgcaacacataggcgacactcgagaagcccaatagcaagctattggggtggcttctccccatcaaaaaagtaat 41841162  T
Q  283 ttgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    || ||||||||||||  |  ||  |||||||||||||||||||||||||||||||||||    
T  41841163 tt-aatatcgtgtgacccattggaccacatatcagatattaaactgataagaacagata 41841220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 37679952 - 37679794
Alignment:
Q  181 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnnta 280  Q
    ||||||||||||||| ||  ||| |||||||||  ||||| ||||||  ||||| |||||||||||||||  || |||| |||||||||||       ||    
T  37679952 ggtggggtgcgccagaccattgctatagtgcaacacaaaggcgacaca-gagaggcccaatagcaagctaccgtggtggcctctccccctc-aataaata 37679855  T
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||  |||   |  ||  |||||||||||||||||||||||||||||||||||    
T  37679854 aatttaatatcaagtggaccattggcccacatatcagatattaaactgataagaacagata 37679794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 44879056 - 44879022
Alignment:
Q  307 ccacatatcagatattaaactgataagaacagata 341  Q
    |||||||||||||||||||||||||||||||||||    
T  44879056 ccacatatcagatattaaactgataagaacagata 44879022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 44880865 - 44880899
Alignment:
Q  307 ccacatatcagatattaaactgataagaacagata 341  Q
    |||||||||||||||||||||||||||||||||||    
T  44880865 ccacatatcagatattaaactgataagaacagata 44880899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 44582924 - 44582892
Alignment:
Q  309 acatatcagatattaaactgataagaacagata 341  Q
    |||||||||||||||||||||||||||||||||    
T  44582924 acatatcagatattaaactgataagaacagata 44582892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 341
Target Start/End: Original strand, 10944432 - 10944467
Alignment:
Q  306 tccacatatcagatattaaactgataagaacagata 341  Q
    ||||||||| ||||||||||||||||||||||||||    
T  10944432 tccacatataagatattaaactgataagaacagata 10944467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 337
Target Start/End: Complemental strand, 42092093 - 42092063
Alignment:
Q  307 ccacatatcagatattaaactgataagaaca 337  Q
    |||||||||||||||||||||||||||||||    
T  42092093 ccacatatcagatattaaactgataagaaca 42092063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 181 - 341
Target Start/End: Original strand, 3461052 - 3461210
Alignment:
Q  181 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnnta 280  Q
    ||||||||| ||||| || |||||||||||||| ||| |||||||||| |||| ||||||||||||||||||| | |||  |||||||||        |     
T  3461052 ggtggggtgtgccag-cctatgcaatagtgcaacgcatagacgacactcgagaaacccaatagcaagctattgaaatggcttctcccccttaaaaaagt- 3461149  T
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  |||  ||||||||||||||||||||||||||||||||||    
T  3461150 aatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagata 3461210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 341
Target Start/End: Original strand, 11652302 - 11652460
Alignment:
Q  181 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnnta 280  Q
    ||||||||||||||| || ||||||||||||||  || || |||||||  |||  |||||||||||||||||| |||||  ||||||||||       |     
T  11652302 ggtggggtgcgccagccc-atgcaatagtgcaacacataggcgacactcaagaagcccaatagcaagctattggagtggcttctccccctcaaaaaaat- 11652399  T
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  ||  |||||||||||||||||||||||||||||||||||    
T  11652400 aatttaatatcgtgtgacccattgggccacatatcagatattaaactgataagaacagata 11652460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 21503875 - 21503717
Alignment:
Q  181 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnnta 280  Q
    ||||||||||||||| || |||||||||||||| ||| |  ||||||||||||    |||||||||||||||||  ||   ||||||||||       ||    
T  21503875 ggtggggtgcgccag-cctatgcaatagtgcaacgcataagcgacacttgagaagttcaatagcaagctattgtgatgacttctccccctcaaaaaaata 21503777  T
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    | || ||||||||||||     ||| |||||||||||||||||||||||||||||||||||    
T  21503776 attt-aatatcgtgtgacctattgagccacatatcagatattaaactgataagaacagata 21503717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 341
Target Start/End: Original strand, 26984700 - 26984735
Alignment:
Q  306 tccacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||||    
T  26984700 tccacatatcagatattaaactgataagaacagata 26984735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 341
Target Start/End: Original strand, 26998773 - 26998808
Alignment:
Q  306 tccacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||||    
T  26998773 tccacatatcagatattaaactgataagaacagata 26998808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 49106563 - 49106597
Alignment:
Q  307 ccacatatcagatattaaactgataagaacagata 341  Q
    |||||||||||||||||||||||||||||||||||    
T  49106563 ccacatatcagatattaaactgataagaacagata 49106597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 49108668 - 49108701
Alignment:
Q  308 cacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||    
T  49108668 cacatatcagatattaaactgataagaacagata 49108701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 50077234 - 50077267
Alignment:
Q  308 cacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||    
T  50077234 cacatatcagatattaaactgataagaacagata 50077267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 26984578 - 26984630
Alignment:
Q  181 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagag 234  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||||    
T  26984578 ggtgggatgcgccagccc-atgcaatagtgcaacgcaaaggcgacacttgagag 26984630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 33988267 - 33988109
Alignment:
Q  181 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnnta 280  Q
    ||||||||||||| ||||  |||||||||||| |||| |  |||||||||| | ||||||||||||||||||| | ||| ||||||||||        |     
T  33988267 ggtggggtgcgcc-ggcctttgcaatagtgcagagcataagcgacacttgaaaaacccaatagcaagctattgaaatggcctctcccccttaaaaaagt- 33988170  T
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  ||| |||||||||||||||||||||||||||||||||||    
T  33988169 aatttaatatcgtgtgactcattgagccacatatcagatattaaactgataagaacagata 33988109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 14708776 - 14708617
Alignment:
Q  181 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnnta 280  Q
    |||||||||||||||||| ||||  ||||||||  ||  ||||||||  ||||  || |||||||||||| |  ||||  |||||||||||       ||    
T  14708776 ggtggggtgcgccaggccaatgctgtagtgcaacacattgacgacacaagagaagcctaatagcaagctactaaagtgacctctccccctcaaaaaagta 14708677  T
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    | || ||||||||||||  |  || ||||||||||||||||||||||||||||||||||||    
T  14708676 attt-aatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14708617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 14654348 - 14654408
Alignment:
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  || ||||||||||||||||||||||||||||||||||||    
T  14654348 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14654408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 14664139 - 14664199
Alignment:
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  || ||||||||||||||||||||||||||||||||||||    
T  14664139 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14664199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 14669717 - 14669777
Alignment:
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  || ||||||||||||||||||||||||||||||||||||    
T  14669717 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14669777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 14681698 - 14681638
Alignment:
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  || ||||||||||||||||||||||||||||||||||||    
T  14681698 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14681638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 14683849 - 14683789
Alignment:
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  || ||||||||||||||||||||||||||||||||||||    
T  14683849 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14683789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 14706187 - 14706127
Alignment:
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  || ||||||||||||||||||||||||||||||||||||    
T  14706187 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14706127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 14652599 - 14652564
Alignment:
Q  306 tccacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||||    
T  14652599 tccacatatcagatattaaactgataagaacagata 14652564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 14662390 - 14662355
Alignment:
Q  306 tccacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||||    
T  14662390 tccacatatcagatattaaactgataagaacagata 14662355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 14674555 - 14674520
Alignment:
Q  306 tccacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||||    
T  14674555 tccacatatcagatattaaactgataagaacagata 14674520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 14676706 - 14676671
Alignment:
Q  306 tccacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||||    
T  14676706 tccacatatcagatattaaactgataagaacagata 14676671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 14679933 - 14679898
Alignment:
Q  306 tccacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||||    
T  14679933 tccacatatcagatattaaactgataagaacagata 14679898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 28366234 - 28366267
Alignment:
Q  308 cacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||    
T  28366234 cacatatcagatattaaactgataagaacagata 28366267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 38175565 - 38175598
Alignment:
Q  308 cacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||    
T  38175565 cacatatcagatattaaactgataagaacagata 38175598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 11872489 - 11872549
Alignment:
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  ||| |||||||||| ||||||||||||||||||||||||    
T  11872489 aatttaatatcgtgtgacccattgaaccacatatcatatattaaactgataagaacagata 11872549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 14716390 - 14716330
Alignment:
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  || ||||||||| ||||||||||||||||||||||||||    
T  14716390 aatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagata 14716330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 337
Target Start/End: Complemental strand, 37422242 - 37422212
Alignment:
Q  307 ccacatatcagatattaaactgataagaaca 337  Q
    |||||||||||||||||||||||||||||||    
T  37422242 ccacatatcagatattaaactgataagaaca 37422212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 271
Target Start/End: Complemental strand, 5575 - 5504
Alignment:
Q  200 atgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctc 271  Q
    |||||| ||||||  |||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  5575 atgcaacagtgcatcgcaaaggcgacacttgagagacccaatagcaagctattgtggtggactctccacctc 5504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 9026966 - 9026899
Alignment:
Q  200 atgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccc 267  Q
    |||||||||||||||||| || |||||||||||| ||||||||||||||||||| | ||| |||||||    
T  9026966 atgcaatagtgcaaagcataggcgacacttgagaaacccaatagcaagctattgaaatggtctctccc 9026899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 271
Target Start/End: Complemental strand, 9008201 - 9008130
Alignment:
Q  200 atgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctc 271  Q
    |||||||||||||||||| || |||||||||||| |||||||| |||| ||||| | ||| |||||||||||    
T  9008201 atgcaatagtgcaaagcataggcgacacttgagaaacccaataacaagttattgaaatggcctctccccctc 9008130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 341
Target Start/End: Original strand, 19232309 - 19232467
Alignment:
Q  181 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnnta 280  Q
    |||||||||||||| ||  |||||||||||||| ||| |   |||||||||||  |||||||||||||||||| |||||  ||||||||||       |     
T  19232309 ggtggggtgcgccaagcttatgcaatagtgcaacgcataagtgacacttgagaagcccaatagcaagctattgaagtggcttctccccctcaaaaaggt- 19232407  T
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||| ||||||  | |||   |||||||||| |||||||||||||||||||||||    
T  19232408 aatttaatattgtgtgacccaatgggtcacatatcag-tattaaactgataagaacagata 19232467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 341
Target Start/End: Complemental strand, 43850243 - 43850088
Alignment:
Q  185 gggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnntaaatt 284  Q
    |||||||||| ||| |||||||||||||| ||| || |||||| | |||   ||||||||||||||||| ||||  |||||||||||       | | ||    
T  43850243 gggtgcgccaagcctatgcaatagtgcaacgcataggcgacacattagaagtccaatagcaagctattgaagtgacctctccccctcaaaaaagtgattt 43850144  T
Q  285 gaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
     |||||| |||||  |  ||  |||||||||||||||||||||||||||||||||||    
T  43850143 -aatatcatgtgactcattgggccacatatcagatattaaactgataagaacagata 43850088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 2841025 - 2841085
Alignment:
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  ||| |||||||||||||||||||||||||||||||||||    
T  2841025 aatttaatatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagata 2841085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 30734062 - 30734027
Alignment:
Q  306 tccacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||||    
T  30734062 tccacatatcagatattaaactgataagaacagata 30734027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 32918154 - 32918119
Alignment:
Q  306 tccacatatcagatattaaactgataagaacagata 341  Q
    ||||||||||||||||||||||||||||||||||||    
T  32918154 tccacatatcagatattaaactgataagaacagata 32918119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 9032126 - 9032092
Alignment:
Q  307 ccacatatcagatattaaactgataagaacagata 341  Q
    |||||||||||||||||||||||||||||||||||    
T  9032126 ccacatatcagatattaaactgataagaacagata 9032092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 10763908 - 10763942
Alignment:
Q  303 tgatccacatatcagatattaaactgataagaaca 337  Q
    |||||||||||||||||||||||||||||||||||    
T  10763908 tgatccacatatcagatattaaactgataagaaca 10763942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 30732107 - 30732047
Alignment:
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    |||| ||||||||||||  |  || ||||||||| ||||||||||||||||||||||||||    
T  30732107 aatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagata 30732047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 8973492 - 8973422
Alignment:
Q  200 atgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccct 270  Q
    |||||||||||||| ||| |  | |||||||||| |||||| |||||||||||| | ||| ||||||||||    
T  8973492 atgcaatagtgcaacgcatatgcaacacttgagaaacccaacagcaagctattgaaatggtctctccccct 8973422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 9008088 - 9008060
Alignment:
Q  313 atcagatattaaactgataagaacagata 341  Q
    |||||||||||||||||||||||||||||    
T  9008088 atcagatattaaactgataagaacagata 9008060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 9026853 - 9026825
Alignment:
Q  313 atcagatattaaactgataagaacagata 341  Q
    |||||||||||||||||||||||||||||    
T  9026853 atcagatattaaactgataagaacagata 9026825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 3643837 - 3643679
Alignment:
Q  181 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnnta 280  Q
    ||||||||||||||| || ||||||||||||||  || |  | ||||| |||| ||||||||||||||||||||  | |  |||||||||        ||    
T  3643837 ggtggggtgcgccag-ccaatgcaatagtgcaacacataagcaacactcgagaaacccaatagcaagctattgtgatagtttctcccccttaaaaaagta 3643739  T
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    | || ||||||||||||  | |||  |||||||||||||||||||||||||||||||||||    
T  3643738 attt-aatatcgtgtgacccaatgggccacatatcagatattaaactgataagaacagata 3643679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 7525166 - 7525007
Alignment:
Q  181 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactctccccctcnnnnnnnta 280  Q
    |||||||||||||  ||| |||||||||||||| |||  |||||||| ||||| |||||  ||||||||| |   | || |||||||||||       ||    
T  7525166 ggtggggtgcgcctagcccatgcaatagtgcaacgcatggacgacacatgagaaacccagcagcaagctactaaggcggcctctccccctcaaaaaagta 7525067  T
Q  281 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagata 341  Q
    | || ||||||||||||  |  ||   ||||||||||||||||||||||||||||||||||    
T  7525066 attt-aatatcgtgtgatccattggatcacatatcagatattaaactgataagaacagata 7525007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 1716486 - 1716520
Alignment:
Q  307 ccacatatcagatattaaactgataagaacagata 341  Q
    |||||||||||||||||||||||||||||||||||    
T  1716486 ccacatatcagatattaaactgataagaacagata 1716520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 4103318 - 4103284
Alignment:
Q  307 ccacatatcagatattaaactgataagaacagata 341  Q
    |||||||||||||||||||||||||||||||||||    
T  4103318 ccacatatcagatattaaactgataagaacagata 4103284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 8128671 - 8128610
Alignment:
Q  201 tgcaatagtgcaaagcaaagacgacacttgagagaccca--atagcaagctattgtagtgga 260  Q
    |||||||||||||  ||||||||||||||||||||||||  ||||||||||||||| |||||    
T  8128671 tgcaatagtgcaacacaaagacgacacttgagagacccaatatagcaagctattgtggtgga 8128610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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