View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13125_low_25 (Length: 331)

Name: NF13125_low_25
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13125_low_25
NF13125_low_25
[»] chr1 (11 HSPs)
chr1 (210-316)||(15488319-15488425)
chr1 (19-198)||(15488781-15488963)
chr1 (16-89)||(29007774-29007847)
chr1 (16-77)||(45205019-45205080)
chr1 (16-87)||(42556689-42556760)
chr1 (25-90)||(48830143-48830208)
chr1 (25-81)||(44936657-44936713)
chr1 (19-90)||(15360832-15360903)
chr1 (25-67)||(6262700-6262742)
chr1 (17-82)||(38578473-38578538)
chr1 (30-90)||(30815707-30815767)
[»] chr5 (4 HSPs)
chr5 (16-89)||(18704094-18704166)
chr5 (25-90)||(35135729-35135794)
chr5 (30-82)||(32969189-32969241)
chr5 (25-65)||(39750106-39750146)
[»] chr3 (8 HSPs)
chr3 (16-67)||(1816544-1816595)
chr3 (16-82)||(24235741-24235807)
chr3 (16-87)||(48397587-48397658)
chr3 (31-82)||(54775074-54775125)
chr3 (19-65)||(31337462-31337508)
chr3 (14-55)||(28779329-28779370)
chr3 (16-52)||(23249534-23249570)
chr3 (15-51)||(35246648-35246684)
[»] chr7 (3 HSPs)
chr7 (17-67)||(31338469-31338519)
chr7 (16-98)||(49060470-49060552)
chr7 (25-90)||(23918895-23918960)
[»] chr6 (6 HSPs)
chr6 (16-82)||(31420904-31420970)
chr6 (16-89)||(2514641-2514714)
chr6 (30-89)||(4325380-4325439)
chr6 (31-82)||(5328920-5328971)
chr6 (45-98)||(24836286-24836339)
chr6 (17-89)||(10452419-10452491)
[»] chr2 (6 HSPs)
chr2 (16-89)||(10143111-10143184)
chr2 (18-64)||(31740019-31740065)
chr2 (16-66)||(36863683-36863733)
chr2 (30-87)||(3458598-3458655)
chr2 (16-89)||(5133711-5133784)
chr2 (30-82)||(17952773-17952825)
[»] chr8 (3 HSPs)
chr8 (33-89)||(12224974-12225030)
chr8 (30-67)||(31315525-31315562)
chr8 (38-82)||(26820145-26820189)
[»] chr4 (5 HSPs)
chr4 (30-89)||(32724058-32724117)
chr4 (16-82)||(49219085-49219151)
chr4 (25-65)||(8130137-8130177)
chr4 (25-65)||(27623598-27623638)
chr4 (25-65)||(46013367-46013407)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 210 - 316
Target Start/End: Complemental strand, 15488425 - 15488319
Alignment:
Q  210 aactttatgaagaactatgcaacactaatgagcaccagtatttttctgctgtacctgtagcaaagtccgtaactgcaattgtgactgcgatgccaatgtt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15488425 aactttatgaagaactatgcaacactaatgagcaccagtatttttctgctgtacctgtagcaaagtccgtaactgcaattgtgactgcgatgccaatgtt 15488326  T
Q  310 ttctctg 316  Q
    |||||||    
T  15488325 ttctctg 15488319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 15488963 - 15488781
Alignment:
Q  19 acaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataaatc----------cttataagtccaacat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| ||          ||||||||||||||||    
T  15488963 acaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagaaacaacttatacataagtccttataagcgcttataagtccaacat 15488864  T
Q  109 agattgaacaaacgtgtcgactgtcgatagtgtctgagaaggattaagtggttgatagtgaactgtttacccaaacgtgtatttttgcaa 198  Q
    |||||||||||| |       |||||||||||||||||||||||| ||||||||||||| || |||||| |||||| |||||||| ||||    
T  15488863 agattgaacaaatg-------tgtcgatagtgtctgagaaggattgagtggttgatagtcaattgtttatccaaacatgtattttagcaa 15488781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 29007774 - 29007847
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataa 89  Q
    |||||||| |||| ||||||| |||||||||||||||||  || |||||| | ||||| |||||||||||||||    
T  29007774 aaaacaacttatagcttatatgaaaatagtttgactttaatttttcttttgttatagaaataacttagacataa 29007847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 45205080 - 45205019
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatata 77  Q
    |||||||| | || |||||||  ||||||||||||||||| |||||||||||||||||||||    
T  45205080 aaaacaacttctagcttatatggaaatagtttgactttattttatcttttatcatagatata 45205019  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 42556689 - 42556760
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacat 87  Q
    |||||||| |||| ||||||||||| |||||||| ||||| | ||||||| ||||||| |||||||| ||||    
T  42556689 aaaacaacttatagcttatataaaagtagtttgattttatttcatcttttgtcatagaaataacttatacat 42556760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 48830143 - 48830208
Alignment:
Q  25 tatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataaa 90  Q
    |||| ||||||| |||||||||||||||||| ||||||||  | ||||| |||||||| |||||||    
T  48830143 tatagcttatatgaaaatagtttgactttattttatctttggtaatagaaataacttatacataaa 48830208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 44936657 - 44936713
Alignment:
Q  25 tatatcttatataaaaatagtttgactttatgttatcttttatcatagatataactt 81  Q
    |||| ||||||| |||||||||||||||||| ||||||||| | ||||| |||||||    
T  44936657 tatagcttatatgaaaatagtttgactttatcttatcttttgttatagaaataactt 44936713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 15360903 - 15360832
Alignment:
Q  19 acaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataaa 90  Q
    ||||| |||| ||||||| |||| ||||||||||||| ||||||||| | ||||| |||||| | |||||||    
T  15360903 acaacttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaataactaatacataaa 15360832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 6262742 - 6262700
Alignment:
Q  25 tatatcttatataaaaatagtttgactttatgttatcttttat 67  Q
    |||| ||||||||||||||||||||||| || |||||||||||    
T  6262742 tatagcttatataaaaatagtttgacttgattttatcttttat 6262700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 38578538 - 38578473
Alignment:
Q  17 aaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataactta 82  Q
    ||||||| |||| |||||| ||||||| ||| ||||||||||||||||| | ||||| ||| ||||    
T  38578538 aaacaacttatagcttatacaaaaataatttaactttatgttatcttttgttatagaaatagctta 38578473  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 30815707 - 30815767
Alignment:
Q  30 cttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataaa 90  Q
    ||||||| |||||||||| ||||||| ||||||||| | ||||| | | ||||||||||||    
T  30815707 cttatatgaaaatagtttaactttattttatcttttgttatagaaaaagcttagacataaa 30815767  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 18704094 - 18704166
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataa 89  Q
    |||||||| |||| ||||||||||||||| |||||||||| ||||||||| | ||||| |||||||| ||||||    
T  18704094 aaaacaacttatagcttatataaaaatagcttgactttat-ttatcttttgttatagaaataacttatacataa 18704166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 35135729 - 35135794
Alignment:
Q  25 tatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataaa 90  Q
    |||| ||||||| |||||||||||||||||| ||||||||| | ||||| ||| |||| |||||||    
T  35135729 tatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaa 35135794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 32969189 - 32969241
Alignment:
Q  30 cttatataaaaatagtttgactttatgttatcttttatcatagatataactta 82  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||| | ||||||    
T  32969189 cttatataaaaataatttgactttattttatcttttgttatagaaacaactta 32969241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 39750146 - 39750106
Alignment:
Q  25 tatatcttatataaaaatagtttgactttatgttatctttt 65  Q
    |||| ||||||| |||||||||||||||||| |||||||||    
T  39750146 tataacttatatgaaaatagtttgactttattttatctttt 39750106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 1816595 - 1816544
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttat 67  Q
    |||||||| ||||||||||| ||||| ||||||||||||| |||||||||||    
T  1816595 aaaacaacttatatcttatacaaaaacagtttgactttattttatcttttat 1816544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 24235741 - 24235807
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataactta 82  Q
    |||||||| |||| |||||||  ||||||||||||||||| ||||||||| | ||||| ||||||||    
T  24235741 aaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaaataactta 24235807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 48397658 - 48397587
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacat 87  Q
    |||||||| |||| |||| ||||||| | ||||||||||| ||||||||||| ||| | |||||||| ||||    
T  48397658 aaaacaacttatagcttaaataaaaacaatttgactttattttatcttttattataaaaataacttatacat 48397587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 54775125 - 54775074
Alignment:
Q  31 ttatataaaaatagtttgactttatgttatcttttatcatagatataactta 82  Q
    |||||||||||| |||||||||||| ||||||||| | ||||| ||||||||    
T  54775125 ttatataaaaatggtttgactttattttatcttttgttatagaaataactta 54775074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 31337462 - 31337508
Alignment:
Q  19 acaacgtatatcttatataaaaatagtttgactttatgttatctttt 65  Q
    ||||| |||| |||||||||||| ||||||||||||| |||||||||    
T  31337462 acaacttataacttatataaaaacagtttgactttattttatctttt 31337508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 28779370 - 28779329
Alignment:
Q  14 caaaaacaacgtatatcttatataaaaatagtttgactttat 55  Q
    |||||||||| |||| ||||||| ||||||||||||||||||    
T  28779370 caaaaacaacttatagcttatatgaaaatagtttgactttat 28779329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 23249570 - 23249534
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactt 52  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  23249570 aaaacaacttatatcttatataaaaacagtttgactt 23249534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 35246648 - 35246684
Alignment:
Q  15 aaaaacaacgtatatcttatataaaaatagtttgact 51  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  35246648 aaaaacaacttatagcttatataaaaatagtttgact 35246684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 31338519 - 31338469
Alignment:
Q  17 aaacaacgtatatcttatataaaaatagtttgactttatgttatcttttat 67  Q
    ||||||| |||| |||||||||||| ||||||||||||| |||||||||||    
T  31338519 aaacaacttataacttatataaaaacagtttgactttattttatcttttat 31338469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 49060552 - 49060470
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataaatccttata 98  Q
    |||| ||| |||| |||||||||||||| ||||||||||| |||| |||| | ||||| ||| |||| |||||||| ||||||    
T  49060552 aaaataacttatagcttatataaaaataatttgactttattttattttttgttatagaaatagcttatacataaatacttata 49060470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 23918960 - 23918895
Alignment:
Q  25 tatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataaa 90  Q
    |||| ||||||| |||| | ||||||||||| ||||||||| | ||||| |||||||| |||||||    
T  23918960 tatagcttatatgaaaacaatttgactttattttatcttttgtaatagagataacttacacataaa 23918895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 31420970 - 31420904
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataactta 82  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||| | ||||| ||||| ||| ||||    
T  31420970 aaaacaacttatatcttatataaaaatagtttgattttattttaccatttattatagaaatagctta 31420904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 2514714 - 2514641
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataa 89  Q
    |||| ||| |||| || |||||||| |||||||||||||| ||||||||||| ||||| ||| |||| ||||||    
T  2514714 aaaataacttatagctcatataaaattagtttgactttattttatcttttattatagaaatagcttatacataa 2514641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 4325380 - 4325439
Alignment:
Q  30 cttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataa 89  Q
    ||||||| ||||||||||| || ||| ||||| ||||| ||||| |||||||||||||||    
T  4325380 cttatatgaaaatagtttgtctctattttatcatttattatagaaataacttagacataa 4325439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 5328971 - 5328920
Alignment:
Q  31 ttatataaaaatagtttgactttatgttatcttttatcatagatataactta 82  Q
    |||||||||||| |||||||||||| ||||||||| | ||||| ||||||||    
T  5328971 ttatataaaaatggtttgactttattttatcttttgttatagaaataactta 5328920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 24836286 - 24836339
Alignment:
Q  45 tttgactttatgttatcttttatcatagatataacttagacataaatccttata 98  Q
    ||||||||||| ||||||||| | ||||| |||||||| |||||||| ||||||    
T  24836286 tttgactttattttatcttttgttatagaaataacttatacataaatacttata 24836339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 10452419 - 10452491
Alignment:
Q  17 aaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataa 89  Q
    ||||||| |||| ||||||| |||||||||||| ||||| |||| |||| | ||||| ||| |||| ||||||    
T  10452419 aaacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataa 10452491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 10143184 - 10143111
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataa 89  Q
    |||| ||| |||| |||||||||||| |||||||||| || ||||||||| | ||||| |||||||| ||||||    
T  10143184 aaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttatacataa 10143111  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 31740019 - 31740065
Alignment:
Q  18 aacaacgtatatcttatataaaaatagtttgactttatgttatcttt 64  Q
    |||||| |||| ||||||| |||||||||||||||||| ||||||||    
T  31740019 aacaacttatagcttatatgaaaatagtttgactttattttatcttt 31740065  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 36863683 - 36863733
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatctttta 66  Q
    |||||||  |||| ||||||||||||| |||||||||||| ||||||||||    
T  36863683 aaaacaatttataacttatataaaaattgtttgactttattttatctttta 36863733  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 3458655 - 3458598
Alignment:
Q  30 cttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacat 87  Q
    ||||||| |||| ||||||||||||| ||||||||| | ||| | |||||||||||||    
T  3458655 cttatatgaaaaaagtttgactttattttatcttttgttataaaaataacttagacat 3458598  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 5133784 - 5133711
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataa 89  Q
    |||||| | ||||||||||||||||| |||||  |||||| ||||||||| | ||||| ||| |||| ||||||    
T  5133784 aaaacagcttatatcttatataaaaacagtttatctttattttatcttttgttatagaaatagcttatacataa 5133711  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 17952773 - 17952825
Alignment:
Q  30 cttatataaaaatagtttgactttatgttatcttttatcatagatataactta 82  Q
    ||||||| |||||||||||||||||| ||||||||| | ||||| ||| ||||    
T  17952773 cttatatgaaaatagtttgactttattttatcttttgttatagaaatagctta 17952825  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 12224974 - 12225030
Alignment:
Q  33 atataaaaatagtttgactttatgttatcttttatcatagatataacttagacataa 89  Q
    |||| |||||||||||||||||| ||||||||| || |||| |||||||| ||||||    
T  12224974 atatgaaaatagtttgactttattttatcttttgtcttagaaataacttatacataa 12225030  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 31315525 - 31315562
Alignment:
Q  30 cttatataaaaatagtttgactttatgttatcttttat 67  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  31315525 cttacataaaaatagtttgactttattttatcttttat 31315562  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 26820189 - 26820145
Alignment:
Q  38 aaaatagtttgactttatgttatcttttatcatagatataactta 82  Q
    |||||||||||||||||| ||||||||| | ||||| ||||||||    
T  26820189 aaaatagtttgactttattttatcttttgttatagaaataactta 26820145  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 32724117 - 32724058
Alignment:
Q  30 cttatataaaaatagtttgactttatgttatcttttatcatagatataacttagacataa 89  Q
    ||||||| |||||||||||||||||| ||||||||| | ||||| |||  ||||||||||    
T  32724117 cttatatgaaaatagtttgactttattttatcttttgtaatagaaatagattagacataa 32724058  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 49219151 - 49219085
Alignment:
Q  16 aaaacaacgtatatcttatataaaaatagtttgactttatgttatcttttatcatagatataactta 82  Q
    |||||||| |||| ||||||| |||||| ||||||||||| |||| |||| | ||||| ||||||||    
T  49219151 aaaacaacttatagcttatatgaaaataatttgactttattttatattttgttatagaaataactta 49219085  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 8130177 - 8130137
Alignment:
Q  25 tatatcttatataaaaatagtttgactttatgttatctttt 65  Q
    |||| ||||||| |||||| |||||||||||||||||||||    
T  8130177 tatagcttatatgaaaataatttgactttatgttatctttt 8130137  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 27623638 - 27623598
Alignment:
Q  25 tatatcttatataaaaatagtttgactttatgttatctttt 65  Q
    |||| ||||||| |||||||||||||||||| |||||||||    
T  27623638 tatagcttatattaaaatagtttgactttattttatctttt 27623598  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 46013367 - 46013407
Alignment:
Q  25 tatatcttatataaaaatagtttgactttatgttatctttt 65  Q
    |||| |||||||||||| ||||||||||||| |||||||||    
T  46013367 tataacttatataaaaacagtttgactttattttatctttt 46013407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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