View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13125_low_27 (Length: 308)

Name: NF13125_low_27
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13125_low_27
NF13125_low_27
[»] chr2 (1 HSPs)
chr2 (16-308)||(12998573-12998865)
[»] chr7 (2 HSPs)
chr7 (134-195)||(22529086-22529147)
chr7 (134-196)||(680051-680112)
[»] chr3 (3 HSPs)
chr3 (144-195)||(25802399-25802450)
chr3 (134-195)||(25238978-25239039)
chr3 (134-195)||(37045266-37045327)
[»] chr5 (1 HSPs)
chr5 (134-196)||(1822140-1822202)
[»] scaffold0333 (1 HSPs)
scaffold0333 (134-195)||(5254-5315)
[»] chr8 (1 HSPs)
chr8 (134-195)||(27926132-27926193)
[»] chr4 (1 HSPs)
chr4 (134-195)||(23943087-23943148)
[»] chr6 (1 HSPs)
chr6 (144-196)||(21312215-21312267)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 12998573 - 12998865
Alignment:
Q  16 atgagtatatataatcactcattcataaaaaccccacagttttagcatgtttcacatgacacaatattagaatgggtgacttgtgcgaagttttccgaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12998573 atgagtatatataatcactcattcataaaaaccccacagttttagcatgtttcacatgacacaatattagaatgggtgacttgtgcgaagttttccgaaa 12998672  T
Q  116 atcagtgcgcgtgaagacaaaaaactcatgttgctttgcaggatcagtcaacaatgcttaaagtcgtctcagatgttacacccacgtttgatttaaaaat 215  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||    
T  12998673 atca-tgcgcgtgaagacaaaaaactcgtgttgctttgcaggatcagtcaacaatgcttaaagtcgtctcagatgttacagccgcgcttgatttaaaaat 12998771  T
Q  216 ttgtc-nnnnnnntaaataatcactcatccacccttgcttggattgtgattattgtaatcgatagaatgtagtttgaaagattattctgtatgt 308  Q
    |||||        |||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  12998772 ttgtcaaaaaaaataaataatcactcatccacccttgcttggattgtaattattgtaaacaatagaatgtagtttgaaagattattctgtatgt 12998865  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 22529147 - 22529086
Alignment:
Q  134 aaaaaactcatgttgctttgcaggatcagtcaacaatgcttaaagtcgtctcagatgttaca 195  Q
    |||| |||||||||| |||| ||| |||||| ||||||||||||||||||  ||||||||||    
T  22529147 aaaagactcatgttggtttgtagggtcagtcgacaatgcttaaagtcgtccgagatgttaca 22529086  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 680051 - 680112
Alignment:
Q  134 aaaaaactcatgttgctttgcaggatcagtcaacaatgcttaaagtcgtctcagatgttacac 196  Q
    |||| |||||||||| |||| ||| |||||| |||||||||||||||||||  ||||||||||    
T  680051 aaaagactcatgttggtttgtagg-tcagtctacaatgcttaaagtcgtctgggatgttacac 680112  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 25802450 - 25802399
Alignment:
Q  144 tgttgctttgcaggatcagtcaacaatgcttaaagtcgtctcagatgttaca 195  Q
    ||||| |||| ||| |||||||||||||||||||||||| | ||||||||||    
T  25802450 tgttggtttgtagggtcagtcaacaatgcttaaagtcgtttgagatgttaca 25802399  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 25239039 - 25238978
Alignment:
Q  134 aaaaaactcatgttgctttgcaggatcagtcaacaatgcttaaagtcgtctcagatgttaca 195  Q
    |||| |||| ||||| |||| ||| |||||| ||||||||||||||||| | ||||||||||    
T  25239039 aaaagactcgtgttggtttgtagggtcagtcgacaatgcttaaagtcgtatgagatgttaca 25238978  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 37045266 - 37045327
Alignment:
Q  134 aaaaaactcatgttgctttgcaggatcagtcaacaatgcttaaagtcgtctcagatgttaca 195  Q
    |||| |||| ||||| |||| ||| |||||| |||||||||||||||||||  |||||||||    
T  37045266 aaaagactcgtgttggtttgtagggtcagtcgacaatgcttaaagtcgtctgggatgttaca 37045327  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 1822140 - 1822202
Alignment:
Q  134 aaaaaactcatgttgctttgcaggatcagtcaacaatgcttaaagtcgtctcagatgttacac 196  Q
    |||| |||| ||||| |||| ||| || |||||||||||||||||||||||  ||||||||||    
T  1822140 aaaagactcgtgttggtttgtagggtcggtcaacaatgcttaaagtcgtctgggatgttacac 1822202  T

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Target: scaffold0333 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 5254 - 5315
Alignment:
Q  134 aaaaaactcatgttgctttgcaggatcagtcaacaatgcttaaagtcgtctcagatgttaca 195  Q
    |||| |||| ||||| |||| ||| |||||| |||||||||||||||||||  |||||||||    
T  5254 aaaagactcgtgttggtttgtagggtcagtcgacaatgcttaaagtcgtctgggatgttaca 5315  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 27926132 - 27926193
Alignment:
Q  134 aaaaaactcatgttgctttgcaggatcagtcaacaatgcttaaagtcgtctcagatgttaca 195  Q
    |||| |||| ||||| |||| ||| |||||| |||||||||||||||||||  |||||||||    
T  27926132 aaaagactcgtgttggtttgtagggtcagtcgacaatgcttaaagtcgtctgggatgttaca 27926193  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 23943148 - 23943087
Alignment:
Q  134 aaaaaactcatgttgctttgcaggatcagtcaacaatgcttaaagtcgtctcagatgttaca 195  Q
    |||| |||| ||||| |||| ||| |||||| |||||||||||||||||||  |||||||||    
T  23943148 aaaagactcgtgttggtttgtagggtcagtcgacaatgcttaaagtcgtctgggatgttaca 23943087  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 21312215 - 21312267
Alignment:
Q  144 tgttgctttgcaggatcagtcaacaatgcttaaagtcgtctcagatgttacac 196  Q
    ||||| |||| ||| |||||| |||||||||||||||||||  ||||||||||    
T  21312215 tgttggtttgtagggtcagtcgacaatgcttaaagtcgtctgggatgttacac 21312267  T

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