View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_low_28 (Length: 305)
Name: NF13125_low_28
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 7793960 - 7793680
Alignment:
| Q |
1 |
aaagatatttcacttcagggaaggacatcaaccaaacagctcaatgaagccaaaacattattaatttttgtttcaactagccaaaacataatgtggaaag |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7793960 |
aaagatatttcatttcagggaaggacatcaaccaaacagctcaatgaagccaaaacattattaatttttgtttcaactagccaaaacataatgtggaaag |
7793861 |
T |
|
| Q |
101 |
tgtttgttacaaaagtataagtcaaaaggtgttaatacagaagcaattatgttcgaaaaaacagaagggtgggcaaaaccacnnnnnnngcagaaactcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7793860 |
tgtttgttacaaaagtataagtcaaaaggtgttaatacagaagcaattatgttcgaaaaaacagaagggtgggcaaaaccacaaaaaaagcagaaactcg |
7793761 |
T |
|
| Q |
201 |
tgtctatgataaagaattgataatagtggtggcaccaaatatatgatcacaattggaatatcacaagctccttagtaatgc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
7793760 |
tgtctatgataaagaattgataatagtggtggcaccaaatatatgatcacaattagaatctcacaagctccttagtaatgc |
7793680 |
T |
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