View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13125_low_29 (Length: 302)
Name: NF13125_low_29
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_29 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 7794486 - 7794195
Alignment:
| Q |
11 |
cacagacataggaaacagagggaatataatctgcgcagtgagtgcattttcgaagtaaatatttgaagagactgtcatcaaagtgtagcttggtgacaga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7794486 |
cacagacataggaaacagagggaatataatctgcgcagtgagtgcattttcgaagtaaatatttgaagagactgtcatcaaagtgtagcttggtgacaga |
7794387 |
T |
|
| Q |
111 |
tgtccagttatttaaccatttctttgacaaaacagaagtcctaactgcatctgttgttggcagaaaagataaaatgtgacttataagctgtggttcagat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7794386 |
tgtccagttatttaaccatttctttgacaaaacagaagtcctaactgcatctgttgttggcagaaaagataaaatgtgacttataagctgtggttcagat |
7794287 |
T |
|
| Q |
211 |
agcttgctgtggagtacgtcttcggtatcatgctttttctttcctgtgctactcgaaccagactccatgttttacttggcctaattctgcag |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7794286 |
agcttgctgtggagtacgtcttcagtatcatgctttttctttcctgtggtactcaaaccagactccatgttttacttggcctaattctgcag |
7794195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 7802431 - 7802327
Alignment:
| Q |
126 |
ccatttctttgacaaaacagaagtcctaactgcatctgttgttggcagaaaagataaaatgtgacttataagctgtggttcagatagcttgctgtggagt |
225 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| || |||| |||||||| |||| |||||||| ||||||| | |
|
|
| T |
7802431 |
ccatttctttgataaaacagaagttctaactgcatctcttgttggcagaaaagataagatttgacctataagctttggt---gatagctttctgtggatt |
7802335 |
T |
|
| Q |
226 |
acgtcttc |
233 |
Q |
| |
|
| |||||| |
|
|
| T |
7802334 |
atgtcttc |
7802327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University