View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13125_low_3 (Length: 906)

Name: NF13125_low_3
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13125_low_3
NF13125_low_3
[»] chr4 (20 HSPs)
chr4 (18-897)||(35743256-35744150)
chr4 (112-178)||(18628473-18628539)
chr4 (112-178)||(25896868-25896934)
chr4 (129-178)||(19305027-19305076)
chr4 (18-59)||(20936079-20936120)
chr4 (72-112)||(23983990-23984030)
chr4 (72-112)||(23990685-23990725)
chr4 (112-172)||(28615608-28615668)
chr4 (18-89)||(47970270-47970341)
chr4 (18-60)||(4071834-4071876)
chr4 (212-258)||(11917727-11917773)
chr4 (18-60)||(32724071-32724113)
chr4 (18-60)||(52735074-52735116)
chr4 (125-171)||(53034726-53034772)
chr4 (112-173)||(1017112-1017173)
chr4 (123-172)||(2811566-2811615)
chr4 (18-92)||(19422370-19422446)
chr4 (110-167)||(21157850-21157907)
chr4 (19-60)||(36734846-36734887)
chr4 (18-51)||(51044544-51044577)
[»] chr6 (11 HSPs)
chr6 (18-112)||(31583653-31583747)
chr6 (19-59)||(30784510-30784550)
chr6 (122-173)||(3738195-3738246)
chr6 (11-62)||(32980486-32980537)
chr6 (112-181)||(26559156-26559225)
chr6 (131-178)||(5977032-5977079)
chr6 (122-177)||(7351592-7351647)
chr6 (18-60)||(1402948-1402990)
chr6 (18-60)||(2027482-2027524)
chr6 (58-111)||(9833113-9833166)
chr6 (18-51)||(30865434-30865467)
[»] chr3 (21 HSPs)
chr3 (112-172)||(26330249-26330309)
chr3 (79-172)||(45590699-45590795)
chr3 (123-172)||(11253596-11253645)
chr3 (20-89)||(28283624-28283693)
chr3 (123-172)||(36189724-36189773)
chr3 (24-60)||(33434083-33434119)
chr3 (123-178)||(22667498-22667553)
chr3 (123-178)||(22724137-22724192)
chr3 (123-178)||(41848636-41848691)
chr3 (18-60)||(1395623-1395665)
chr3 (19-61)||(6241159-6241201)
chr3 (54-112)||(9279328-9279386)
chr3 (18-52)||(20267107-20267141)
chr3 (111-177)||(26542620-26542685)
chr3 (18-104)||(44284090-44284176)
chr3 (132-178)||(48364833-48364879)
chr3 (18-60)||(49586992-49587034)
chr3 (24-66)||(53457335-53457377)
chr3 (18-60)||(53736189-53736231)
chr3 (53-98)||(482808-482853)
chr3 (19-60)||(25195377-25195418)
[»] chr2 (17 HSPs)
chr2 (210-258)||(3423622-3423670)
chr2 (123-173)||(15370248-15370298)
chr2 (18-60)||(17952777-17952819)
chr2 (112-178)||(32364651-32364717)
chr2 (18-112)||(37033996-37034090)
chr2 (123-169)||(37276839-37276885)
chr2 (116-177)||(32821897-32821958)
chr2 (18-51)||(34054986-34055019)
chr2 (123-166)||(11513991-11514034)
chr2 (54-92)||(1742054-1742092)
chr2 (18-60)||(1939408-1939450)
chr2 (123-173)||(22878193-22878243)
chr2 (18-60)||(31740035-31740077)
chr2 (71-172)||(35713228-35713331)
chr2 (131-173)||(37419592-37419634)
chr2 (140-177)||(2416425-2416462)
chr2 (140-173)||(31561667-31561700)
[»] chr8 (16 HSPs)
chr8 (123-178)||(39551129-39551184)
chr8 (126-173)||(43368625-43368672)
chr8 (112-177)||(1664453-1664518)
chr8 (20-112)||(14949842-14949934)
chr8 (18-60)||(1470932-1470974)
chr8 (18-52)||(8799357-8799391)
chr8 (17-51)||(10437836-10437870)
chr8 (18-112)||(13000426-13000520)
chr8 (18-52)||(26820151-26820185)
chr8 (18-60)||(27728097-27728139)
chr8 (123-177)||(35534534-35534587)
chr8 (18-88)||(40280253-40280323)
chr8 (112-173)||(6950406-6950467)
chr8 (18-51)||(11119084-11119117)
chr8 (18-51)||(39392746-39392779)
chr8 (18-51)||(40728503-40728536)
[»] chr5 (16 HSPs)
chr5 (112-178)||(18286875-18286941)
chr5 (138-184)||(6392569-6392615)
chr5 (18-60)||(35135738-35135780)
chr5 (18-60)||(37063150-37063192)
chr5 (18-60)||(39823197-39823239)
chr5 (110-170)||(1899235-1899295)
chr5 (18-66)||(7096197-7096245)
chr5 (18-89)||(985585-985658)
chr5 (111-173)||(10638460-10638522)
chr5 (18-68)||(11040996-11041045)
chr5 (18-60)||(14295458-14295500)
chr5 (18-60)||(28586842-28586884)
chr5 (18-60)||(34690826-34690868)
chr5 (123-176)||(1084061-1084114)
chr5 (112-173)||(2568742-2568803)
chr5 (18-51)||(29117015-29117048)
[»] chr1 (17 HSPs)
chr1 (123-181)||(28075799-28075857)
chr1 (123-173)||(4200329-4200379)
chr1 (116-173)||(3597206-3597263)
chr1 (112-173)||(4549466-4549527)
chr1 (111-172)||(12564425-12564486)
chr1 (112-165)||(32515374-32515427)
chr1 (112-167)||(9507315-9507370)
chr1 (18-61)||(42351981-42352024)
chr1 (131-173)||(10199333-10199375)
chr1 (18-60)||(15360846-15360888)
chr1 (127-173)||(24417660-24417706)
chr1 (18-60)||(39777615-39777657)
chr1 (26-104)||(43954055-43954132)
chr1 (18-60)||(44936666-44936708)
chr1 (18-60)||(45999364-45999406)
chr1 (18-67)||(14737774-14737823)
chr1 (19-60)||(30815711-30815752)
[»] chr7 (11 HSPs)
chr7 (124-173)||(28691761-28691810)
chr7 (112-172)||(41040249-41040309)
chr7 (18-60)||(2727436-2727478)
chr7 (112-177)||(431396-431461)
chr7 (112-169)||(48157049-48157106)
chr7 (18-89)||(6552317-6552388)
chr7 (123-178)||(8427108-8427163)
chr7 (122-173)||(29363602-29363653)
chr7 (116-170)||(24967149-24967203)
chr7 (18-75)||(30160951-30161008)
chr7 (112-173)||(31751684-31751745)
[»] scaffold0199 (1 HSPs)
scaffold0199 (112-177)||(6894-6959)
[»] scaffold0141 (1 HSPs)
scaffold0141 (123-178)||(9698-9753)
[»] scaffold0590 (1 HSPs)
scaffold0590 (18-52)||(1158-1192)
[»] scaffold0275 (1 HSPs)
scaffold0275 (18-52)||(2783-2817)


Alignment Details
Target: chr4 (Bit Score: 758; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 18 - 897
Target Start/End: Original strand, 35743256 - 35744150
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataaactatcacgaagagtttatggaaataagttggaaataacttatagacatgt---aa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||   ||    
T  35743256 atttctataacaaaagataaaataaaggcaaactactttcataaactatcatgaagagtttatggaaataagttggaaacaacttataaacatgtcataa 35743355  T
Q  115 gctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaattaaattatggtgttgtagatggtataagagtcatac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35743356 gctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaattaaattatggtgttgtagatggtataagagtcatac 35743455  T
Q  215 ctttttgtcatctctgctagggcatcggccattccttgttttcctccattacttgctcctctaatagcacttttcttcccagcagcagctgattttcctg 314  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35743456 ctttttgtcatctctgctagggcatcagccattccttgttttcctccattacttgctcctccaatagcacttttcttcccagcagcagctgattttcctg 35743555  T
Q  315 ttaaactaggtccttcaacttttcctttaagagttctatacaaattgcctagctgtgttgaccttttcaatttagtagttgacttggggcgcaaggttct 414  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35743556 ttaagctaggtccttcaacttttcctttaagagttctatacaaattgcctagctgtgttgaccttttcaatttagtagttgacttggggcgcaaggttct 35743655  T
Q  415 ccctgctccaccgggaggtggaggtggtggggctcctccctttccacctggtatcggtggtggaggggctggaactgatccacctttcataggt------ 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  35743656 ccctgctccaccgggaggtggaggtggtggggctcctccctttccacctggtatcggtggtggaggggctggaactgatccacctttcataggtggtggt 35743755  T
Q  509 ---ggtggtggggctgcagccatcgtcgctgaaccggaactaagagacattggtggcggaggaggtggtggaatcctaactgctgct------ggtggag 599  Q
       |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||    
T  35743756 ggaggtggtggggctgcagtcatcgtcgctgaaccggaactaagagacattggtggcggaggaggtggtggaatcctaactgctgctggtggaggtggag 35743855  T
Q  600 gtggaggaggagttgaaggtgggggcactgccacatttggttgcagcataggtggcggaggcggtggtggtggaggtgccgagggtggtaatatctgtac 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35743856 gtggaggaggagttgaaggtgggggcactgccacatttggttgcagcataggtggcggaggcggtggtggtggaggtgccgagggtggtaatatctgtac 35743955  T
Q  700 nnnnnnnggcattatcgtgaatggtgcaggtaggggaggagggggtgggggagaagatgaagaaatagacattgatgcttgttgcagatgagaaggtgtt 799  Q
           |||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35743956 tttttttggc---atcatgaatggtgcaggtaggggaggagggggtgggggagaagatgaagaaatagacattgatgcttgttgtagatgagaaggtgtt 35744052  T
Q  800 tgtgttggtttaggagaatttggttgaaattgtttaggagatagtggtaactccacttcttccataacttgatcatgtttaaccattttttgatgatg 897  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35744053 tgtgttggtttaggagaatttggttgaaattgtttaggagatagtggtaactccacttcttccataacttgatcatgtttaaccattttttgatgatg 35744150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 18628539 - 18628473
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    |||||||| | |||||||||||||| || |||| | ||||||||| |||||||| ||||||||||||    
T  18628539 taagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaatacgtcaatctaaat 18628473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 25896868 - 25896934
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    |||||||| |||||||||||||||| |||| ||  |||||||||| ||||||||||| |||| ||||    
T  25896868 taagctctcctaaacagtctcacaagtgctaatgctagtagataaactcaaataagtgaatccaaat 25896934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 19305027 - 19305076
Alignment:
Q  129 tctcacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    |||||||||||||||| | | |||||||||||||||||||||||| ||||    
T  19305027 tctcacaaatgcttatgtcaatagataatctcaaataagtcaatccaaat 19305076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 20936120 - 20936079
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcat 59  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  20936120 atttctataacaaaagataaaataaagtcaaactattttcat 20936079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 23984030 - 23983990
Alignment:
Q  72 agagtttatggaaataagttggaaataacttatagacatgt 112  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  23984030 agagcttatggaaataagttggaaaaaacttatagacatgt 23983990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 23990725 - 23990685
Alignment:
Q  72 agagtttatggaaataagttggaaataacttatagacatgt 112  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  23990725 agagcttatggaaataagttggaaacaacttatagacatgt 23990685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 28615608 - 28615668
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaat 172  Q
    |||||||||| ||||||||| |||||||||||| | | ||||||| |||||||||| ||||    
T  28615608 taagctcttcgaaacagtcttacaaatgcttatgtcattagataagctcaaataagccaat 28615668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 47970270 - 47970341
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataaactatcacgaagagtttatggaaataag 89  Q
    ||||||||||||||||||||||| ||| ||||||| ||||| |  |||||| | |||| ||||| |||||||    
T  47970270 atttctataacaaaagataaaatgaagtcaaactattttcaaattctatcatggagagcttatgcaaataag 47970341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 4071834 - 4071876
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||||| |||| || |||||||    
T  4071834 atttctataacaaaagataaaataaagtcaaattattttcata 4071876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 11917727 - 11917773
Alignment:
Q  212 tacctttttgtcatctctgctagggcatcggccattccttgttttcc 258  Q
    ||||||||||||||||| | ||| ||||| |||||||||||||||||    
T  11917727 tacctttttgtcatctcagttagagcatcagccattccttgttttcc 11917773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 32724071 - 32724113
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    |||||||| |||||||||||||||||| ||||||| |||||||    
T  32724071 atttctattacaaaagataaaataaagtcaaactattttcata 32724113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 52735074 - 52735116
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    |||||| |||||||||||||||||||| |||| ||||||||||    
T  52735074 atttctgtaacaaaagataaaataaagtcaaattactttcata 52735116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 53034772 - 53034726
Alignment:
Q  125 acagtctcacaaatgcttatattagtagataatctcaaataagtcaa 171  Q
    |||||| ||| ||||||||||| ||||||||| ||||||||||||||    
T  53034772 acagtcacacgaatgcttatatcagtagataagctcaaataagtcaa 53034726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 1017112 - 1017173
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    |||| ||||| |||||||||||||| || |||| | ||||||| | ||||||||||||||||    
T  1017112 taagttcttccaaacagtctcacaagtgtttatgtcagtagattagctcaaataagtcaatc 1017173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 2811566 - 2811615
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaat 172  Q
    ||||||||||| ||||||||||   ||||||||| |||||||||||||||    
T  2811566 aaacagtctcataaatgcttatgccagtagataacctcaaataagtcaat 2811615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 19422370 - 19422446
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttc--ataaactatcacgaagagtttatggaaataagttg 92  Q
    ||||||||||||||||||| ||||||| |||||   ||||  ||||||||||  | |||| ||||||||||||||||    
T  19422370 atttctataacaaaagatataataaagtcaaacatttttcatataaactatcctggagagcttatggaaataagttg 19422446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 21157850 - 21157907
Alignment:
Q  110 tgtaagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataag 167  Q
    |||||||||||| ||||||||| |||| ||||||| | ||||||| | ||||||||||    
T  21157850 tgtaagctcttccaaacagtcttacaagtgcttatgtcagtagatgagctcaaataag 21157907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 36734846 - 36734887
Alignment:
Q  19 tttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||| |||||||||| ||||||| |||||||    
T  36734846 tttctataacaaaaggtaaaataaagtcaaactattttcata 36734887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 51044577 - 51044544
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaact 51  Q
    ||||||||||||||||||||||||||| ||||||    
T  51044577 atttctataacaaaagataaaataaagtcaaact 51044544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 31583653 - 31583747
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataaactatcacgaagagtttatggaaataagttggaaataacttatagacatgt 112  Q
    ||||||||||||| ||||||||| ||| |||| |  |||||||| ||||| |||| || |||||||||||||||| ||| ||||||| |||||||    
T  31583653 atttctataacaagagataaaatgaagtcaaattgttttcataagctatcccgaaaagcttatggaaataagttgaaaacaacttatggacatgt 31583747  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 30784510 - 30784550
Alignment:
Q  19 tttctataacaaaagataaaataaaggcaaactactttcat 59  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  30784510 tttctataacaaaagataaaataaagtcaaactactttcat 30784550  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 3738195 - 3738246
Alignment:
Q  122 taaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    ||||||||||||||| |||||||  |||||||||| ||||||||||||||||    
T  3738195 taaacagtctcacaagtgcttatgctagtagataaactcaaataagtcaatc 3738246  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 32980486 - 32980537
Alignment:
Q  11 atcatcaatttctataacaaaagataaaataaaggcaaactactttcataaa 62  Q
    |||||| |||||||||| |||| ||||||||||| |||||||||||||||||    
T  32980486 atcatctatttctataataaaacataaaataaagtcaaactactttcataaa 32980537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 26559225 - 26559156
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaattaa 181  Q
    |||| ||||| ||||||||||||||||||||||   ||||| ||| ||||||||||| |||| |||||||    
T  26559225 taagttcttccaaacagtctcacaaatgcttatgccagtaggtaaactcaaataagttaatccaaattaa 26559156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 5977032 - 5977079
Alignment:
Q  131 tcacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    ||||||||||||||  |||||||||| ||| |||||||||||||||||    
T  5977032 tcacaaatgcttatgctagtagataagctcgaataagtcaatctaaat 5977079  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 7351647 - 7351592
Alignment:
Q  122 taaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaa 177  Q
    |||||| |||||||| ||||||| | ||||||||| ||||||||||||||| ||||    
T  7351647 taaacaatctcacaagtgcttatgtcagtagataaactcaaataagtcaatttaaa 7351592  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 1402948 - 1402990
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    |||||||||||||||||||||||||||  |||||| |||||||    
T  1402948 atttctataacaaaagataaaataaagttaaactattttcata 1402990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 2027524 - 2027482
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    |||| |||||||||||||||||||||| ||||||| |||||||    
T  2027524 atttttataacaaaagataaaataaagtcaaactattttcata 2027482  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 9833166 - 9833113
Alignment:
Q  58 ataaactatcacgaagagtttatggaaataagttggaaataacttatagacatg 111  Q
    |||| |||||| |||||| |||||||||||||||| |||||| |||| ||||||    
T  9833166 ataagctatcatgaagagcttatggaaataagttgaaaataatttatggacatg 9833113  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 30865434 - 30865467
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaact 51  Q
    ||||||||||||||||||||||||||| ||||||    
T  30865434 atttctataacaaaagataaaataaagtcaaact 30865467  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 26330309 - 26330249
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaat 172  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||| |||||    
T  26330309 taagctcttctaaacagtctcacaaatacttatttcagtagataacctcaaataaatcaat 26330249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 45590699 - 45590795
Alignment:
Q  79 atggaaataagttggaaataacttatagacat---gtaagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaat 172  Q
    |||||||||||||| ||||||||||| ||| |    |||||||| | |||||||||||||| |||||||  ||||||||||  ||||| ||||||||    
T  45590699 atggaaataagttgaaaataacttatggacttatcataagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtcaat 45590795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 11253596 - 11253645
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaat 172  Q
    |||||||||| ||| |||||||  ||||||||||||||||||||||||||    
T  11253596 aaacagtctctcaagtgcttatgctagtagataatctcaaataagtcaat 11253645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 28283693 - 28283624
Alignment:
Q  20 ttctataacaaaagataaaataaaggcaaactactttcataaactatcacgaagagtttatggaaataag 89  Q
    |||||||||||||||||||   ||| ||||||| ||||||||||||||  ||| |||||| |||||||||    
T  28283693 ttctataacaaaagataaatgtaagtcaaactattttcataaactatccagaatagtttacggaaataag 28283624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 36189724 - 36189773
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaat 172  Q
    |||||||||||||| |||||||| ||||| |||| |||||||||||||||    
T  36189724 aaacagtctcacaagtgcttatactagtaaataagctcaaataagtcaat 36189773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 33434119 - 33434083
Alignment:
Q  24 ataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||| |||||||||||||||    
T  33434119 ataacaaaagataaaataaagtcaaactactttcata 33434083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 22667498 - 22667553
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    |||||||||||||| ||||||| | ||||||||| |||||||||| ||||| ||||    
T  22667498 aaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatcgaaat 22667553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 22724137 - 22724192
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    |||||||||||||| ||||||| | ||||||||| |||||||||| ||||| ||||    
T  22724137 aaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatcgaaat 22724192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 41848691 - 41848636
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    ||||| ||| |||| || |||| ||||||||||| |||||||||||||||||||||    
T  41848691 aaacaatcttacaagtgtttatgttagtagataaactcaaataagtcaatctaaat 41848636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 1395623 - 1395665
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||||| |||| || |||||||    
T  1395623 atttctataacaaaagataaaataaagtcaaattattttcata 1395665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 6241201 - 6241159
Alignment:
Q  19 tttctataacaaaagataaaataaaggcaaactactttcataa 61  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||    
T  6241201 tttctataacaaaagttaaaataaagtcaaactattttcataa 6241159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 9279386 - 9279328
Alignment:
Q  54 tttcataaactatcacgaagagtttatggaaataagttggaaataacttatagacatgt 112  Q
    ||||||||||||||| |||||||||| ||||||||| || ||| | |||||| ||||||    
T  9279386 tttcataaactatcatgaagagtttaaggaaataagctgaaaacagcttatatacatgt 9279328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 20267107 - 20267141
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaacta 52  Q
    ||||||||||||||||||||||||||| |||||||    
T  20267107 atttctataacaaaagataaaataaagtcaaacta 20267141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 26542620 - 26542685
Alignment:
Q  111 gtaagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaa 177  Q
    ||||||||||| ||||||||| |||| | ||||| | |||||||||  |||||||||||||||||||    
T  26542620 gtaagctcttccaaacagtcttacaagtacttatgtgagtagataa-atcaaataagtcaatctaaa 26542685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 44284176 - 44284090
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataaactatcacgaagagtttatggaaataagttggaaataacttat 104  Q
    ||||||||||||||| |||||| |||| ||||||  |||||||| |||||  | |||| |||| |||||||| || ||||| |||||    
T  44284176 atttctataacaaaaaataaaacaaagtcaaactgttttcataagctatcctggagagcttatagaaataagctgaaaatagcttat 44284090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 48364879 - 48364833
Alignment:
Q  132 cacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    |||||||| ||||| ||||| |||| |||||||||||||||||||||    
T  48364879 cacaaatgtttatactagtaaataaactcaaataagtcaatctaaat 48364833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 49587034 - 49586992
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||||| ||||||  |||||||    
T  49587034 atttctataacaaaagataaaataaagtcaaactgttttcata 49586992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 53457335 - 53457377
Alignment:
Q  24 ataacaaaagataaaataaaggcaaactactttcataaactat 66  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||    
T  53457335 ataacaaaagataaaataaagtcaaactattttcataacctat 53457377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 53736231 - 53736189
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||| | ||||||| |||||||    
T  53736231 atttctataacaaaagataaaataatgtcaaactattttcata 53736189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 482853 - 482808
Alignment:
Q  53 ctttcataaactatcacgaagagtttatggaaataagttggaaata 98  Q
    |||||||||||||||  |||||||||||||||||||| || |||||    
T  482853 ctttcataaactatcttgaagagtttatggaaataagctgaaaata 482808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 25195377 - 25195418
Alignment:
Q  19 tttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    |||||||||||||||||||||||||| |||| || |||||||    
T  25195377 tttctataacaaaagataaaataaagtcaaattattttcata 25195418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 3423670 - 3423622
Alignment:
Q  210 catacctttttgtcatctctgctagggcatcggccattccttgttttcc 258  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  3423670 catacctttttgtcatctctgctagagcatcagccattccttgttttcc 3423622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 15370298 - 15370248
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    ||||||||||||||||||||||   ||||||||| ||||||||||||||||    
T  15370298 aaacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatc 15370248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 17952819 - 17952777
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  17952819 atttctataacaaaagataaaataaagtcaaactattttcata 17952777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 32364717 - 32364651
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    |||||||| | ||||| | ||||||||||||||  ||||||||| ||||||||||||||||| ||||    
T  32364717 taagctctcccaaacaatttcacaaatgcttatgatagtagatattctcaaataagtcaatccaaat 32364651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 37033996 - 37034090
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataaactatcacgaagagtttatggaaataagttggaaataacttatagacatgt 112  Q
    |||||||||| |||||||||||||||| ||||| | ||||||||  ||| | | |||| |||| ||||||||||| ||| || ||||| ||||||    
T  37033996 atttctataaaaaaagataaaataaagtcaaacgattttcataagatattatggagagcttatagaaataagttgaaaacaatttataaacatgt 37034090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 37276839 - 37276885
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtc 169  Q
    |||||||||||||| ||||||||||||||||||| || |||||||||    
T  37276839 aaacagtctcacaagtgcttatattagtagataaacttaaataagtc 37276885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 32821897 - 32821958
Alignment:
Q  116 ctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaa 177  Q
    |||||| |||||||||  ||||||||||  || |||||||| ||||||||||||||||||||    
T  32821897 ctcttccaaacagtcttgcaaatgcttacgttggtagataagctcaaataagtcaatctaaa 32821958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 34055019 - 34054986
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaact 51  Q
    ||||||||||||||||||||||||||||||||||    
T  34055019 atttctataacaaaagataaaataaaggcaaact 34054986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 11513991 - 11514034
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataa 166  Q
    |||||||||||||| |||||||  ||||||||||||||||||||    
T  11513991 aaacagtctcacaagtgcttatgctagtagataatctcaaataa 11514034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 1742092 - 1742054
Alignment:
Q  54 tttcataaactatcacgaagagtttatggaaataagttg 92  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  1742092 tttcataatctatcatgaagagtttatggaaataagttg 1742054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1939450 - 1939408
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    |||||||||||||||||||||||||||  |||||| |||||||    
T  1939450 atttctataacaaaagataaaataaagtgaaactattttcata 1939408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 22878193 - 22878243
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    |||||||||||||| ||||||| | ||| ||||| ||||||||||||||||    
T  22878193 aaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatc 22878243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 31740077 - 31740035
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||    
T  31740077 atttctataactaaagataaaataaagtcaaactattttcata 31740035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 35713228 - 35713331
Alignment:
Q  71 aagagtttatggaaataagttggaaataacttatagacatg---taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataag 167  Q
    ||||| |||||||||||  ||| ||||||||||| ||||||   ||||||||||| ||||||||||||| || ||||   ||||||| | |||||||||     
T  35713228 aagagattatggaaatatattgaaaataacttatggacatgttataagctcttct-aacagtctcacaagtgtttatgcaagtagattagctcaaataaa 35713326  T
Q  168 tcaat 172  Q
    |||||    
T  35713327 tcaat 35713331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 37419634 - 37419592
Alignment:
Q  131 tcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    |||||| ||||||||| ||||||||| ||||||||||||||||    
T  37419634 tcacaagtgcttatataagtagataaactcaaataagtcaatc 37419592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 2416425 - 2416462
Alignment:
Q  140 cttatattagtagataatctcaaataagtcaatctaaa 177  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  2416425 cttatgttagtagataaactcaaataagtcaatctaaa 2416462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 31561700 - 31561667
Alignment:
Q  140 cttatattagtagataatctcaaataagtcaatc 173  Q
    ||||| ||||||||||||||||||||||||||||    
T  31561700 cttatgttagtagataatctcaaataagtcaatc 31561667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 39551184 - 39551129
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  39551184 aaacagtttcacaaatgcttatatccgtagataatctcaaataagtcaatccaaat 39551129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 43368672 - 43368625
Alignment:
Q  126 cagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||||    
T  43368672 cagtctcacaaatgcttatgttagtagataagatcaaataagtcaatc 43368625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 1664453 - 1664518
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaa 177  Q
    |||||||| | |||||||||||||| || ||||  |||||||||| |||||||||||| |||||||    
T  1664453 taagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtccatctaaa 1664518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 14949842 - 14949934
Alignment:
Q  20 ttctataacaaaagataaaataaaggcaaactactttcataaactatcacgaagagtttatggaaataagttggaaataacttatagacatgt 112  Q
    |||||||||||||||||||||| || ||||||  |||||||| |||||   ||||| |||| |||||||| || ||| | ||||| |||||||    
T  14949842 ttctataacaaaagataaaatagagtcaaactcttttcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgt 14949934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1470974 - 1470932
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    |||||||||| |||||||||||||||| |||| ||||||||||    
T  1470974 atttctataataaaagataaaataaagtcaaattactttcata 1470932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 8799357 - 8799391
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaacta 52  Q
    ||||||||||||||||||||||||||| |||||||    
T  8799357 atttctataacaaaagataaaataaagtcaaacta 8799391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 10437836 - 10437870
Alignment:
Q  17 aatttctataacaaaagataaaataaaggcaaact 51  Q
    |||||||||||||||||||||||||||| ||||||    
T  10437836 aatttctataacaaaagataaaataaagtcaaact 10437870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 13000520 - 13000426
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataaactatcacgaagagtttatggaaataagttggaaataacttatagacatgt 112  Q
    |||| |||||| ||| ||||||||| | |||||| |||||||||||| ||| | | || ||||||||||||| || ||| ||||| | |||||||    
T  13000520 atttatataaccaaatataaaataatgtcaaactgctttcataaactgtcatgcaaagcttatggaaataagctgaaaacaacttgtggacatgt 13000426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 26820151 - 26820185
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaacta 52  Q
    ||||||||||||||||||||||||||| |||||||    
T  26820151 atttctataacaaaagataaaataaagtcaaacta 26820185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 27728139 - 27728097
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    |||||||||| |||||||||||||||| ||||||| |||||||    
T  27728139 atttctataaaaaaagataaaataaagtcaaactattttcata 27728097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 35534587 - 35534534
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaa 177  Q
    |||||||||||||||  ||||| ||||||||||| ||||||||||||| ||||||    
T  35534587 aaacagtctcacaaaa-cttatgttagtagataagctcaaataagtcattctaaa 35534534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 40280323 - 40280253
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataaactatcacgaagagtttatggaaataa 88  Q
    ||||||| |||||||||||||||||||  ||| |  |||||||| |||||  |||||| ||||||||||||    
T  40280323 atttctacaacaaaagataaaataaagtaaaattgttttcataagctatctagaagagcttatggaaataa 40280253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 6950406 - 6950467
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    |||||||| | ||||| ||||||||||| ||||   ||||||||| ||||||||||||||||    
T  6950406 taagctctcccaaacaatctcacaaatgtttatgccagtagataaactcaaataagtcaatc 6950467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 11119117 - 11119084
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaact 51  Q
    ||||||||||||||||||||||||||| ||||||    
T  11119117 atttctataacaaaagataaaataaagtcaaact 11119084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 39392779 - 39392746
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaact 51  Q
    ||||||||||||||||||||||||||| ||||||    
T  39392779 atttctataacaaaagataaaataaagtcaaact 39392746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 40728536 - 40728503
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaact 51  Q
    ||||||||||||||||||||||||||| ||||||    
T  40728536 atttctataacaaaagataaaataaagtcaaact 40728503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 18286875 - 18286941
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||| ||| ||||| |||||| ||||    
T  18286875 taagctcttttaaacggtctcgcaaatgcttatattagtagataaactcgaataattcaatccaaat 18286941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 6392615 - 6392569
Alignment:
Q  138 tgcttatattagtagataatctcaaataagtcaatctaaattaaatt 184  Q
    ||||||||||||||||||| |||||||||||||||| |||| |||||    
T  6392615 tgcttatattagtagataaactcaaataagtcaatcgaaataaaatt 6392569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 35135780 - 35135738
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  35135780 atttctataacaaaagataaaataaagtcaaactattttcata 35135738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 37063192 - 37063150
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  37063192 atttctataacaaaagataaaataaagtcaaactattttcata 37063150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 39823239 - 39823197
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    |||| |||||||||||||||||||||| |||||||||||||||    
T  39823239 atttatataacaaaagataaaataaagtcaaactactttcata 39823197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 1899235 - 1899295
Alignment:
Q  110 tgtaagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtca 170  Q
    |||||||||||| ||||||||||||| ||| ||||  ||||| |||| |||||||||||||    
T  1899235 tgtaagctcttcaaaacagtctcacatatgtttatgctagtaaataagctcaaataagtca 1899295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 7096245 - 7096197
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataaactat 66  Q
    ||||||||||||||||||||||||||| ||||| | |||||||| ||||    
T  7096245 atttctataacaaaagataaaataaagtcaaaccattttcataagctat 7096197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 985585 - 985658
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactacttt--cataaactatcacgaagagtttatggaaataag 89  Q
    ||||| ||||||||||||||||||||| ||||||  |||  ||||| |||||| ||||||  ||||||||||||    
T  985585 atttccataacaaaagataaaataaagtcaaactgttttcacataagctatcatgaagagactatggaaataag 985658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 10638522 - 10638460
Alignment:
Q  111 gtaagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    ||||||||| | ||| ||||| |||| ||||||| || ||||||||||| |||||||||||||    
T  10638522 gtaagctctcccaaatagtcttacaagtgcttatgttggtagataatcttaaataagtcaatc 10638460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 11040996 - 11041045
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataaactatca 68  Q
    |||||||||||||| |||||||||||| ||||||| ||| |||||||||||    
T  11040996 atttctataacaaacgataaaataaagtcaaacta-ttttataaactatca 11041045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 14295458 - 14295500
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||||| ||||||  |||||||    
T  14295458 atttctataacaaaagataaaataaagtcaaactgttttcata 14295500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 28586884 - 28586842
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||||| ||||||  |||||||    
T  28586884 atttctataacaaaagataaaataaagtcaaactgttttcata 28586842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 34690826 - 34690868
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||||| || | ||||||||||    
T  34690826 atttctataacaaaagataaaataaagtcacaatactttcata 34690868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 1084114 - 1084061
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaa 176  Q
    ||||||| |||||| ||||||| | |||| |||| |||||||||||||||||||    
T  1084114 aaacagtttcacaagtgcttatgtcagtaaataaactcaaataagtcaatctaa 1084061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 2568742 - 2568803
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    |||| |||||||||||||||| ||| |||||| |  ||||||||| |||||||||| |||||    
T  2568742 taagttcttctaaacagtctctcaagtgcttacaccagtagataagctcaaataagacaatc 2568803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 29117048 - 29117015
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaact 51  Q
    ||||||||||||||||||||||||||| ||||||    
T  29117048 atttctataacaaaagataaaataaagtcaaact 29117015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 28075799 - 28075857
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaattaa 181  Q
    |||||| ||||||| | ||||||||||||||||| ||||||||||||| ||||||||||    
T  28075799 aaacagcctcacaagttcttatattagtagataagctcaaataagtcattctaaattaa 28075857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 4200329 - 4200379
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    |||||||||||||||||||||||| |||| |||| || |||||||||||||    
T  4200329 aaacagtctcacaaatgcttatatcagtatataaactaaaataagtcaatc 4200379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 3597263 - 3597206
Alignment:
Q  116 ctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    |||||| |||||||||||||| || |||||| | ||||||| ||||||||||||||||    
T  3597263 ctcttccaaacagtctcacaagtggttatatcattagataacctcaaataagtcaatc 3597206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 4549527 - 4549466
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    |||||||| | ||||||||||| ||||||||||   |||||||||||||||||||| |||||    
T  4549527 taagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatc 4549466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 12564486 - 12564425
Alignment:
Q  111 gtaagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaat 172  Q
    ||||||||| | |||||||| ||||| ||||||||| |||| |||| |||||||||||||||    
T  12564486 gtaagctctcccaaacagtcacacaagtgcttatatcagtatataagctcaaataagtcaat 12564425  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 32515427 - 32515374
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaata 165  Q
    |||||||| | |||||||||||||| ||||||| ||||||||||| ||||||||    
T  32515427 taagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaata 32515374  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 9507315 - 9507370
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataag 167  Q
    |||||||| | |||||||||||||||||| |||  |||||||||| ||||||||||    
T  9507315 taagctctcccaaacagtctcacaaatgcctatgctagtagataagctcaaataag 9507370  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 42352024 - 42351981
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataa 61  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||    
T  42352024 atttctataacaaaagttaaaataaagtcaaactattttcataa 42351981  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 10199375 - 10199333
Alignment:
Q  131 tcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    |||||| ||||||| ||||||||||| ||||||||||||||||    
T  10199375 tcacaagtgcttatgttagtagataagctcaaataagtcaatc 10199333  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 15360846 - 15360888
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||||| ||||||  |||||||    
T  15360846 atttctataacaaaagataaaataaagtcaaactgttttcata 15360888  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 24417706 - 24417660
Alignment:
Q  127 agtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    |||||||||| | ||||||||| ||||||| ||||||||||||||||    
T  24417706 agtctcacaagtacttatattaatagataaactcaaataagtcaatc 24417660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 39777615 - 39777657
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||    
T  39777615 atttctataacaaaagatagaataaagtcaaactgctttcata 39777657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 43954132 - 43954055
Alignment:
Q  26 aacaaaagataaaataaaggcaaactactttcataaactatcacgaagagtttatggaaataagttggaaataacttat 104  Q
    ||||||||||||||||||| ||||||||||| ||||  ||||  |||||| ||||||| ||||| || ||| |||||||    
T  43954132 aacaaaagataaaataaagccaaactacttt-ataagttatcctgaagagcttatggagataagctgaaaacaacttat 43954055  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 44936708 - 44936666
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    |||||||||||||||||||| |||||| ||||||| |||||||    
T  44936708 atttctataacaaaagataagataaagtcaaactattttcata 44936666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 45999406 - 45999364
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    |||||||||||||||||||| |||||| |||||| ||||||||    
T  45999406 atttctataacaaaagataagataaagtcaaactgctttcata 45999364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 14737823 - 14737774
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataaactatc 67  Q
    ||||||||||||||||||||||||||| |||| |  |||||||| |||||    
T  14737823 atttctataacaaaagataaaataaagtcaaattgttttcataagctatc 14737774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 30815752 - 30815711
Alignment:
Q  19 tttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||||  |||||| |||||||    
T  30815752 tttctataacaaaagataaaataaagttaaactattttcata 30815711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 28691810 - 28691761
Alignment:
Q  124 aacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    ||||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  28691810 aacagtctcacaaatgcttatgttagcagataaactcaaataagtcaatc 28691761  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 41040249 - 41040309
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaat 172  Q
    |||||||||||||| || ||||||||| ||||||| ||||||||| ||||||||| |||||    
T  41040249 taagctcttctaaagagcctcacaaatacttatatcagtagataaactcaaataaatcaat 41040309  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 2727478 - 2727436
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcata 60  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  2727478 atttctataacaaaagataaaataaaggcaaactcttttcata 2727436  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 431396 - 431461
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaa 177  Q
    |||||||||  || || ||||||||||| |||| ||||||||||  ||||||||||||||||||||    
T  431396 taagctctttcaatcaatctcacaaatgtttatgttagtagatagcctcaaataagtcaatctaaa 431461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 48157106 - 48157049
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtc 169  Q
    |||||||| | ||||||||||||||||||||| || |||| |||| ||||||||||||    
T  48157106 taagctctcccaaacagtctcacaaatgcttaaatcagtaaataagctcaaataagtc 48157049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 6552388 - 6552317
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataaactatcacgaagagtttatggaaataag 89  Q
    ||||||| ||||||||||||||||     |||||| ||||||||||||||| | |||||||||| |||||||    
T  6552388 atttctacaacaaaagataaaatagctataaactattttcataaactatcatgcagagtttatgaaaataag 6552317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 8427108 - 8427163
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    |||||||||||||| | ||||| ||||||||||| ||||||||| |||||| ||||    
T  8427108 aaacagtctcacaagtacttatgttagtagataagctcaaataaatcaatccaaat 8427163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 29363602 - 29363653
Alignment:
Q  122 taaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    ||||||||||||||| ||||||| |||||||||||  ||||||||| |||||    
T  29363602 taaacagtctcacaagtgcttatgttagtagataagttcaaataagccaatc 29363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 24967149 - 24967203
Alignment:
Q  116 ctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtca 170  Q
    |||||| ||||||||||| ||||| ||||| |||||||||| |||||| ||||||    
T  24967149 ctcttccaaacagtctcataaatgtttatactagtagataagctcaaaaaagtca 24967203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 30161008 - 30160951
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaactactttcataaactatcacgaagag 75  Q
    ||||||||  ||||||||||||||||| ||||||  |||||||| |||||||| ||||    
T  30161008 atttctatggcaaaagataaaataaagtcaaactgttttcataatctatcacggagag 30160951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 31751745 - 31751684
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatc 173  Q
    ||||||||| ||||||||||||||||||||||| | | || ||||  | |||||||||||||    
T  31751745 taagctcttataaacagtctcacaaatgcttatgtgactacataagtttaaataagtcaatc 31751684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 6894 - 6959
Alignment:
Q  112 taagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaa 177  Q
    |||||||| | |||||||||||||| || ||||  |||||||||| |||||||||||| |||||||    
T  6894 taagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtccatctaaa 6959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 9753 - 9698
Alignment:
Q  123 aaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaat 178  Q
    |||||||||||||| |  |||| ||||||||||| ||||||||| |||||||||||    
T  9753 aaacagtctcacaagtatttatgttagtagataaactcaaataaatcaatctaaat 9698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 1192 - 1158
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaacta 52  Q
    ||||||||||||||||||||||||||| |||||||    
T  1192 atttctataacaaaagataaaataaagtcaaacta 1158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 2783 - 2817
Alignment:
Q  18 atttctataacaaaagataaaataaaggcaaacta 52  Q
    ||||||||||||||||||||||||||| |||||||    
T  2783 atttctataacaaaagataaaataaagtcaaacta 2817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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