View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13125_low_33 (Length: 280)
Name: NF13125_low_33
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 31028229 - 31027970
Alignment:
| Q |
18 |
aaacagttccctgaacttgtatggtagaacattgcaagacaagagcaatttcgacggcaagatgtctgacaaccggccaaatcggtattcaaatagggat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31028229 |
aaacagttccctgaacttgtatggtagaacattgcaagacaagagcaatttcgacggcaagatgtctgacaaccagccaaatcggtattcaaatagggat |
31028130 |
T |
|
| Q |
118 |
gaagaaaatcaagtgcaaagtagctaagtccatcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctgg |
217 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31028129 |
gaagaaaatcaagcgcaaagtagccaagtccatcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctgg |
31028030 |
T |
|
| Q |
218 |
tttacaactaggaagaagaacatgaggacagctacacgtacgtttgtttgcgcatatatt |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31028029 |
tttacaactaggaagaagaacatgaggacagctacacgtacgtttgtttgcgcatatatt |
31027970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 33805749 - 33805999
Alignment:
| Q |
21 |
cagttccctgaacttgtatggtagaacattgcaagacaagagcaatttcgacggcaagatgtctgacaaccggccaaatcggtattcaaatagggatgaa |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| || ||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
33805749 |
cagttccctgaacttgtatggaagaacattgcaagacaagagcaatttccacgacaagaggtttgacaaccggccagatcagtattcaaagagggatgaa |
33805848 |
T |
|
| Q |
121 |
gaaaatcaagtgcaaagtagctaagtccatcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctggttt |
220 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
33805849 |
gaaaatcaagtgcaaagtaactaagtccatcatcagctttcagaaattcaatagacttttctgatttatcatcaacacaaggcgagacaaaacctggttt |
33805948 |
T |
|
| Q |
221 |
acaact---aggaagaagaacatgaggacagctacacgtacgtttgtttgc |
268 |
Q |
| |
|
|||||| | || |||||||| ||||||||||||| |||| || ||||| |
|
|
| T |
33805949 |
acaactacgatgatgaagaacagaaggacagctacacctacggttatttgc |
33805999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 268
Target Start/End: Complemental strand, 33812555 - 33812305
Alignment:
| Q |
21 |
cagttccctgaacttgtatggtagaacattgcaagacaagagcaatttcgacggcaagatgtctgacaaccggccaaatcggtattcaaatagggatgaa |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| || ||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
33812555 |
cagttccctgaacttgtatggaagaacattgcaagacaagagcaatttccacgacaagaggtttgacaaccggccagatcagtattcaaagagggatgaa |
33812456 |
T |
|
| Q |
121 |
gaaaatcaagtgcaaagtagctaagtccatcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctggttt |
220 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
33812455 |
gaaaatcaagtgcaaagtaactaagtccatcatcagctttcagaaattcaatagacttttctgatttatcatcaacacaaggcgagacaaaacctggttt |
33812356 |
T |
|
| Q |
221 |
acaact---aggaagaagaacatgaggacagctacacgtacgtttgtttgc |
268 |
Q |
| |
|
|||||| | || |||||||| ||||||||||||| |||| || ||||| |
|
|
| T |
33812355 |
acaactacgatgatgaagaacagaaggacagctacacctacggttatttgc |
33812305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 33801279 - 33801532
Alignment:
| Q |
18 |
aaacagttccctgaacttgtatggtagaacattgcaagacaagagcaatttcgacggcaagatgtctgacaaccggccaaatcggtattcaaatagggat |
117 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||| | | || ||||| ||||||| || ||||| |||||| ||||||||| |
|
|
| T |
33801279 |
aaacagttccctgaacttctatgaaagaacattgcaagacaagagcaatttccaagacatgatgtttgacaactggataaatcagtattcgaatagggat |
33801378 |
T |
|
| Q |
118 |
gaagaaaatcaagtgcaaagtagctaagtccatcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctgg |
217 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||||| ||||||||||||| | ||| |||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
33801379 |
gaagaaaatcaagcgcaaagtaaccaagtccatcatcaactttcagaaattcaacagatctttttgat---tcatcatcgcaaggagaggcaaaacctgg |
33801475 |
T |
|
| Q |
218 |
tttacaactaggaagaagaacatgaggacagctacacgtacgtttgtttgcgcatat |
274 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||| ||||||| |||||| |
|
|
| T |
33801476 |
tttacaactaggaagaagaacaagaggacagctacacatacggttgtttgagcatat |
33801532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 49463187 - 49462980
Alignment:
| Q |
21 |
cagttccctgaacttgtatggtagaacattgcaagacaagagcaatttcgacggcaagatgtctgacaaccggccaaatcggtattcaaatagggatgaa |
120 |
Q |
| |
|
||||| || |||||| |||| ||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||| || |||| |||| |
|
|
| T |
49463187 |
cagtttccggaacttttatgaaagaacattgcaagacaagagcaatttccccggcacgatgtttgacaaccagccaaatcggttttcgaaaagggctgaa |
49463088 |
T |
|
| Q |
121 |
gaaaatcaagtgcaaagtagctaagtccatcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctggttt |
220 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||| |||||| ||||| ||||| |||| ||||||||| |||||||||||| | |||||| ||||| |
|
|
| T |
49463087 |
gaaaatcaagtgcaaagtaaccaagtccgtcatcacctttcaaaaattggatagagttttctgatttatc---atcacaaggagaaaaaaaaccaggttt |
49462991 |
T |
|
| Q |
221 |
acaactaggaa |
231 |
Q |
| |
|
|||| |||||| |
|
|
| T |
49462990 |
acaattaggaa |
49462980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 194
Target Start/End: Original strand, 10070795 - 10070956
Alignment:
| Q |
31 |
aacttgtatggtagaacattgcaagacaagagcaatttcgacggcaagatgtctgacaaccggccaaatcggtattcaaatagggatgaagaaaatcaag |
130 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| |||||| ||| ||| |||| ||| |||| | ||||||||| ||| || ||||||| || |||| || |
|
|
| T |
10070795 |
aacttctatggaaggacattgcaagacaagagaaatttccacgacaatatgtttgaaaaccagacaaatcggttttctaaaagggatgtag-aaatgaat |
10070893 |
T |
|
| Q |
131 |
tgcaaagtagctaagtccatcatcagctttcagaaattctatagacttttttgatttatcatca |
194 |
Q |
| |
|
||||||||| | |||||| |||||| ||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
10070894 |
tgcaaagtaac-aagtccgtcatcacctttcagaaattcagtagatttttctgatttatcatca |
10070956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 11003417 - 11003478
Alignment:
| Q |
19 |
aacagttccctgaacttgtatggtagaacattgcaagacaagagcaatttcgacggcaagatg |
81 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
11003417 |
aacagttccc-gaacttctatggtagaacattgctagacaagagcaatttctacggcaagatg |
11003478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 7810960 - 7811013
Alignment:
| Q |
29 |
tgaacttgtatggtagaacattgcaagacaagagcaatttcgacggcaagatgt |
82 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| | ||| |||||| |
|
|
| T |
7810960 |
tgaacttgtatggaagaacattgcaagacaagaccaatttccatggctagatgt |
7811013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University