View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_low_34 (Length: 258)
Name: NF13125_low_34
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_34 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 7794196 - 7793950
Alignment:
| Q |
12 |
agtgagatgaaaacaagcataatatgaaataaccataaaaataatgaactactagaaagaaagcttggcttcaaaaaagttggaaaaaagcataattgtg |
111 |
Q |
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| T |
7794196 |
agtgatatgaaaacaagcataatatgaaataaccataaaaataatgaactactagaaagaaagcttggcttcaaaaaagttggaaaaaagcataattgtg |
7794097 |
T |
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| Q |
112 |
cgaaagaaaataaccattagtgaacctacaaaccataaatttcagtgagacagaaggttaaaccaatagaaatcagcgaaactagcacaagcgcacaaaa |
211 |
Q |
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| T |
7794096 |
cgaaagaaaataaccattagtgaacctacaaaccataaatttcagtgagacagaaggttaaaccaatagaaatcagcgaaactagcacaagcgcacaaaa |
7793997 |
T |
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| Q |
212 |
ctaaggcacagatcaggaagcaacagagaggccattaaagatatttc |
258 |
Q |
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| T |
7793996 |
ctaaggcacagatcaggaagcaacagagaggccattaaagatatttc |
7793950 |
T |
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