View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_low_35 (Length: 251)
Name: NF13125_low_35
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 4923292 - 4923049
Alignment:
| Q |
10 |
aagaatattgttgacaagtaatgtaaaaattgttgacaaggtaaccgctactcaatatccacattgttaataagaaaaatgcaataaatctgnnnnnnnn |
109 |
Q |
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| T |
4923292 |
aagaaaattgttgacaagtaatgtaaaaattgttgacaaggtaaccgctactcaatatgcacattgttaataagaaaaatgcaataaatctgcttcttct |
4923193 |
T |
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| Q |
110 |
nn-----ccttctgaattttatgtaactaaataaattgaccaaccacaaattaaggaaaccacacaaataaactcactattaatttcatcgatgataaaa |
204 |
Q |
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| T |
4923192 |
tttttttccttctgaattttatgtaactaaataaattgaccaaccacaaattaaggaaaccacacaaataaactcactattaatttcattgatgataaaa |
4923093 |
T |
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| Q |
205 |
tgatcatcaatgttgtacaaggacacaatgcataacttcaaaaa |
248 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
4923092 |
tgatcatcaatgttgcacaaggacacaatgcataacttaaaaaa |
4923049 |
T |
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