View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_low_36 (Length: 250)
Name: NF13125_low_36
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_36 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 37928262 - 37928022
Alignment:
| Q |
10 |
aagaatatagtgactgacctggttacttgtgaatcccagcctgagagtccagctacttggtttagagcagccttccactcgtccactctgcagctatatc |
109 |
Q |
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| T |
37928262 |
aagaaaatagtgactgacctggttacttgtgaatcccagcctgagagtccagctacttggtttagagcagccttccactcgtccactctgcagctatatc |
37928163 |
T |
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| Q |
110 |
gttgttgatgcttaacaaaagcttcggcatagctctctctctgatgcctaacagttgacggatccaccttatagaagacaggtatcacttcccttccata |
209 |
Q |
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| T |
37928162 |
gttgttgatgcttaacaaaagcttcggcatagctctctctctgatgcctaacagttgacggatccaccttatagaagacaggtatcacttcccttccata |
37928063 |
T |
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| Q |
210 |
tctctccttacattccagtatctttgtgagttcatccaagc |
250 |
Q |
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| T |
37928062 |
tctctccttacattccagtatctttgtgaattcatccaagc |
37928022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 37959235 - 37959338
Alignment:
| Q |
147 |
tctctgatgcctaacagttgacggatccaccttatagaagacaggtatcacttcccttccatatctctccttacattccagtatctttgtgagttcatcc |
246 |
Q |
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| T |
37959235 |
tctctgatgcctaacatctgacggatccacctcatagaagataggtatcacttcccttccataactcctcttacattggagtatctttgtgagttcatcc |
37959334 |
T |
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| Q |
247 |
aagc |
250 |
Q |
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| T |
37959335 |
aagc |
37959338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 25720676 - 25720459
Alignment:
| Q |
30 |
ggttacttgtgaatcccagcctgagagtccagctacttggtttagagcagccttccactcgtccactctgcagctatatcgttgttgatgcttaacaaaa |
129 |
Q |
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| T |
25720676 |
ggttacttgtgaatcccatcctgacagtccagctacttgagttagagcatccttccatgtatccactttgtccctaaatcgctgttgatgctcaataaaa |
25720577 |
T |
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| Q |
130 |
gcttcggcatagctctctctctgatgcctaacagttgacggatccaccttatagaagacaggtatcacttcccttccatatctctccttacattccagta |
229 |
Q |
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| T |
25720576 |
gcttcctcaaaactctctctttgattcctaacatttgatggatccaccttgtagaagaccggtatcacatcccttccatatatttgtttgcactcgagta |
25720477 |
T |
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| Q |
230 |
tctttgtgagttcatcca |
247 |
Q |
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|||||||||||||||||| |
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| T |
25720476 |
tctttgtgagttcatcca |
25720459 |
T |
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