View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_low_37 (Length: 243)
Name: NF13125_low_37
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 4458975 - 4459094
Alignment:
| Q |
5 |
cgtaaacttctaaaagcaaca--gaaatacaacaagttcctaaataacaaaaagcatcaacacaaggttacccatgatgccaatgtcaaccaccacacct |
102 |
Q |
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| T |
4458975 |
cgtaaacttctaaaagcaacaaagaaatacaacaagttcctaaataacaaaaagcatcaacacaaggttacccatgatgccaatgccaaccaccacacct |
4459074 |
T |
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| Q |
103 |
ctgcaaatcaacaccaaaga |
122 |
Q |
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| T |
4459075 |
ctacaaatcaacaccaaaga |
4459094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 4459118 - 4459222
Alignment:
| Q |
122 |
atcacaacactacgttacaacacattctccaggattccaattcaaactcctgactccctaacaacctattcaaacaataagtaggatgaaaagttccaaa |
221 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4459118 |
atcaccacaatacgttacaacacattctccaggattccaattcaaactcatgactccctaacaacctattcaaacaataagtaggatgaaaagttccaaa |
4459217 |
T |
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| Q |
222 |
cattt |
226 |
Q |
| |
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||||| |
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| T |
4459218 |
cattt |
4459222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4397421 - 4397526
Alignment:
| Q |
1 |
tagccgtaaacttctaaaagcaaca--gaaatacaacaagttcctaaataacaaaaagcatcaacacaaggttacccatgatgccaatgtcaaccaccac |
98 |
Q |
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|||| |||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
4397421 |
tagcagtaaacttctaaaagcaacaacgaaatacaacaagctctaaaataacaaaaaatatcaacacaaggctacccatgatgccaatgtcaaccaccac |
4397520 |
T |
|
| Q |
99 |
acctct |
104 |
Q |
| |
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|||||| |
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| T |
4397521 |
acctct |
4397526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 18047905 - 18047800
Alignment:
| Q |
1 |
tagccgtaaacttctaaaagcaaca--gaaatacaacaagttcctaaataacaaaaagcatcaacacaaggttacccatgatgccaatgtcaaccaccac |
98 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
18047905 |
tagcagtaaacttctaaaagcaacaacgaaatacaacaagctctaaaataacaaaaaatatcaacacaaggctacccatgatgccaatgtcaaccaccac |
18047806 |
T |
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| Q |
99 |
acctct |
104 |
Q |
| |
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|||||| |
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| T |
18047805 |
acctct |
18047800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 1026204 - 1026276
Alignment:
| Q |
25 |
agaaatacaacaagttcctaaataacaaaaagcatcaacacaaggttacccatgatgccaatgtcaaccacca |
97 |
Q |
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||||| |||||||| ||||||||||||||| | |||||||||| || |||||||||||| || ||||||| |
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| T |
1026204 |
agaaacacaacaagcacctaaataacaaaaaactccaacacaaggcaactcatgatgccaatatccaccacca |
1026276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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