View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_low_41 (Length: 235)
Name: NF13125_low_41
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12818469 - 12818247
Alignment:
| Q |
1 |
aatgtccaccggtgatgttccgcaggtagatattggtgatttgtcagatatttggccggggccgatggatcttgctgtgtatgctccggttccgattaat |
100 |
Q |
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| T |
12818469 |
aatgtccaccggtgatgttccgcaggtagatattggtgatttgtcagatatttggccggggccgatggatcttgctgtgtatgctccggttccgattaat |
12818370 |
T |
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| Q |
101 |
tctactcggattttggctgcgccgccccaagcttggttacctcctgatgatgagaactggatttatgattttaatgaagaagccttacaggatgaagttt |
200 |
Q |
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| T |
12818369 |
tctactcggattttggctgcgccgccccaagcttggttacctcctgatgatgagaactggatttatgattttaatgaagaagccttacaggatgaagttt |
12818270 |
T |
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| Q |
201 |
atgattctgattctaaagttgtg |
223 |
Q |
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|||||||||||||||||| |||| |
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| T |
12818269 |
atgattctgattctaaagctgtg |
12818247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 12755392 - 12755299
Alignment:
| Q |
129 |
aagcttggttacctcctgatgatgagaactggatttatgattttaatgaagaagccttacaggatgaagtttatgattctgattctaaagttgtg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12755392 |
aagcttggttacctcctgatgatgagaactggatttatgattttaatgaa-aagccttacaggatgaagtttatgattctgattctaaagctgtg |
12755299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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