View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_low_5 (Length: 687)
Name: NF13125_low_5
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_5 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 48 - 669
Target Start/End: Complemental strand, 70859 - 70245
Alignment:
| Q |
48 |
ttagatttcttctcacatcacaacctaacaaatccaacaaccacatccacaacaaaatcctctcaatacccaccatgcaccccctctttaactgactaca |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70859 |
ttagatttcttctcacatcacaacctaacaaatccaacaaccacatccacaacaaaatcctctcaatacccaccatgcaccccctctttaactgactaca |
70760 |
T |
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| Q |
148 |
ccccctgtgaagaccacacgcgctccttaaaatacacgcgcgacaaaatgatatatcgtgaacgacactgtcctaagaaacatgaaatcttaaagtgtcg |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70759 |
ccccctgtgaagaccacacgcgctccttaaaatacacgcgcgacaaaatgatatatcgtgaacgacactgtcctaagaaacatgaaatcttaaagtgtcg |
70660 |
T |
|
| Q |
248 |
tgttccagcaccaaatggttacaaaaatcctttcccatggcccacaagtagagacatggcttggtatgcaaatgtaccttaccgtcatttaacggtggaa |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70659 |
tgttccagcaccaaatggttacaaaaatcctttcccatggcccacaagtagagacatggcttggtatgcaaatgtaccttaccgtcatttaacggtggaa |
70560 |
T |
|
| Q |
348 |
aaagctggtcaaaattggatccgttttgacggtgataagttccgttttcctggtggtggtactatgtttcctaatggtgctgataagtatattgatgata |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70559 |
aaagctggtcaaaattggatccgttttgacggtgataagttccgttttcctggtggtggtactatgtttcctaatggtgctgataagtatattgatgata |
70460 |
T |
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| Q |
448 |
ttgggaagttgattgatcttgaagatggttctgttagaactgctgttgatactggctgtggggtaagcgtttctcttttctatttatttgtttgtcacta |
547 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
70459 |
ttgggaagttgattgatcttgaagatggttctgttagaactgctgttgatactggttgtggggtaagcgtttctctttactatttatttgtttgtcacta |
70360 |
T |
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| Q |
548 |
tgaaacactcttatacggacacgggacacaacactactcagatacgtcgacaccgctaatgtaaaaaacttagtacacagacaccactacatgtatatca |
647 |
Q |
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|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
70359 |
tgaaacactcttatacgg-------acacaacactacacggatacgtcgacaccgctaatgtaaaaaacacagtacatagacaccactacatgtatatca |
70267 |
T |
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| Q |
648 |
atttacttatagatggtctaag |
669 |
Q |
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|||||||||||||||||||||| |
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| T |
70266 |
atttacttatagatggtctaag |
70245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 306 - 512
Target Start/End: Complemental strand, 45787224 - 45787018
Alignment:
| Q |
306 |
gcttggtatgcaaatgtaccttaccgtcatttaacggtggaaaaagctggtcaaaattggatccgttttgacggtgataagttccgttttcctggtggtg |
405 |
Q |
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||||||||||| ||||| ||| ||||| | | || || |||||||||| ||| ||||||||||| | ||||||||| |||| |||||| || |||| |
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| T |
45787224 |
gcttggtatgctaatgtccctcaccgtgaactcactgttgaaaaagctgttcagaattggatccggtacgacggtgatcggttcttttttcccggcggtg |
45787125 |
T |
|
| Q |
406 |
gtactatgtttcctaatggtgctgataagtatattgatgatattgggaagttgattgatcttgaagatggttctgttagaactgctgttgatactggctg |
505 |
Q |
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| || ||||| |||||||| |||| | |||||||||||||| || |||||||| |||| ||||||||||| |||| ||||| ||||||||||||| |
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| T |
45787124 |
gaaccatgttccctaatggagctggtgcatatattgatgatataggaaagttgataaatctcaaagatggttctattaggactgcacttgatactggctg |
45787025 |
T |
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| Q |
506 |
tggggta |
512 |
Q |
| |
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||||||| |
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| T |
45787024 |
tggggta |
45787018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 657
Target Start/End: Complemental strand, 37113690 - 37113635
Alignment:
| Q |
602 |
gctaatgtaaaaaacttagtacacagacaccactacatgtatatcaatttacttat |
657 |
Q |
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||||||||||||||||||| |||||||||| |||||| | |||| |||||| |||| |
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| T |
37113690 |
gctaatgtaaaaaacttaggacacagacacgactacacggatattaatttatttat |
37113635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 439 - 512
Target Start/End: Complemental strand, 12404443 - 12404370
Alignment:
| Q |
439 |
ttgatgatattgggaagttgattgatcttgaagatggttctgttagaactgctgttgatactggctgtggggta |
512 |
Q |
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||||||||||||||||||||||| ||||| ||||||| ||| | ||||| ||| |||||||||| ||||||||| |
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| T |
12404443 |
ttgatgatattgggaagttgattaatcttaaagatgggtctatcagaaccgctattgatactggttgtggggta |
12404370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 668
Target Start/End: Original strand, 27616239 - 27616314
Alignment:
| Q |
593 |
gtcgacaccgctaatgtaaaaaacttagtacacagacaccactacatgtatatcaatttacttatagatggtctaa |
668 |
Q |
| |
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|||||||||| |||||||||||| || |||| |||||| |||||||||| | |||||| |||||| |||||||| |
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| T |
27616239 |
gtcgacaccgttaatgtaaaaaatacaggacaccgacaccgctacatgtatgttaatttatttataggtggtctaa |
27616314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 426
Target Start/End: Original strand, 11151434 - 11151467
Alignment:
| Q |
393 |
tttcctggtggtggtactatgtttcctaatggtg |
426 |
Q |
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| T |
11151434 |
tttcctggtggaggtactatgtttcctaatggtg |
11151467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 668
Target Start/End: Complemental strand, 32201073 - 32200996
Alignment:
| Q |
591 |
acgtcgacaccgctaatgtaaaaaacttagtacacagacaccactacatgtatatcaatttacttatagatggtctaa |
668 |
Q |
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||||||||||||||||||||||||| ||| |||| ||||||| || || ||| | |||||| ||| ||| ||||||| |
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| T |
32201073 |
acgtcgacaccgctaatgtaaaaaatataggacaccgacaccattaaatatatgttaatttatttaaagacggtctaa |
32200996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 665
Target Start/End: Complemental strand, 34409830 - 34409758
Alignment:
| Q |
594 |
tcgacaccgctaatgtaaaaaact-tagtacacagacaccactacatgtatatcaatttacttatagatggtc |
665 |
Q |
| |
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|||||||||||||||||||||| | ||| |||| ||||||| || || ||||| |||||| ||||||| |||| |
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| T |
34409830 |
tcgacaccgctaatgtaaaaaaatctaggacaccgacaccattagatatatattaatttatttatagacggtc |
34409758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 592 - 668
Target Start/End: Original strand, 32593706 - 32593782
Alignment:
| Q |
592 |
cgtcgacaccgctaatgtaaaaaacttagtacacagacaccactacatgtatatcaatttacttatagatggtctaa |
668 |
Q |
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|||||| |||||||||||||||| | ||| |||| |||||| |||| |||||| |||||| ||||| ||| ||||| |
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| T |
32593706 |
cgtcgataccgctaatgtaaaaaccataggacactgacaccgctacctgtatactaatttatttataaatgatctaa |
32593782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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