View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13125_low_9 (Length: 644)
Name: NF13125_low_9
Description: NF13125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13125_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Original strand, 54150666 - 54151075
Alignment:
| Q |
17 |
aaattatcaccgtgtgcctctcaagactctttcgatctcatgaaacatatgacatgagaaaatccatggagcattctcttgaagaaattggcttcttatc |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54150666 |
aaattatcaccgtgtgcctctcaagactctttagatctcttgaaacatatgacatgagaaaatcaatggagcattctcttgaagaaattggcttcttatc |
54150765 |
T |
|
| Q |
117 |
cttttatgacttggttggtcatgagaatattcctttgaaaacttacactgctttttcaaattttcctctgataatggtaatcatcttttgtgtattatag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54150766 |
cttttatgacttggttggtcatgagaatattcctttgaaaacttacactgctttttcaaaatttcctctgataatggtaatcatcttttgtgtattatag |
54150865 |
T |
|
| Q |
217 |
tcagtattatcttatatatgtgtcctagctaggtat-----------aatactcaagtaatgaatgctatattagctatggtaagatattctctgatttt |
305 |
Q |
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||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
54150866 |
tcagtatgatcttatatatgtgttctagctaggtatatttggaagtgaatactcaagtaatgaatgatatattagctatggtaagatattctctaatttt |
54150965 |
T |
|
| Q |
306 |
cttctactattcatctgtgattttatcattccactcttgtttatgatttttattttctactttcagattgctgaggatcatgctggaaagcaaattgatc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54150966 |
cttctactattcatctgtgattttatcattccactcttgtttatgatttttattttctactttcagattgctgaggatcatgctggaaagcaaattgatc |
54151065 |
T |
|
| Q |
406 |
gaaaattgat |
415 |
Q |
| |
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|||||||||| |
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| T |
54151066 |
gaaaattgat |
54151075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 407 - 636
Target Start/End: Original strand, 54151122 - 54151334
Alignment:
| Q |
407 |
aaaattgataaaaaatacgttgattgaaagagaatgtaacattatactcatactctaatgaagaggcttcaaagtggatggcgagtctttccctcacaga |
506 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54151122 |
aaaattgatccaaaatacgttgattgaaagagaatgtaacattatactc------taatgaagaggcttcaaagtggatggcgagtctttccctcacaga |
54151215 |
T |
|
| Q |
507 |
taacactccaaaggtaaatttcagctagttttcaaacaaaaatgattgctgctatattttattgaactgattcattttggattgatattcactctgtgag |
606 |
Q |
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| T |
54151216 |
taacactccaaaggtaaatttc-----------aaacaaaaatgattgctgctatattttattgaactgattcattttggattgatattcactctgtgag |
54151304 |
T |
|
| Q |
607 |
taatgaaatcttgaatcattgcttcttctc |
636 |
Q |
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|| ||||||||||||||||||||||||||| |
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| T |
54151305 |
tattgaaatcttgaatcattgcttcttctc |
54151334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 49485318 - 49485266
Alignment:
| Q |
90 |
ttctcttgaagaaattggcttcttatccttttatgacttggttggtcatgaga |
142 |
Q |
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|||||||||||||| ||||||||||||||| ||| ||||||||||| |||||| |
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|
| T |
49485318 |
ttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgaga |
49485266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 49532021 - 49531969
Alignment:
| Q |
90 |
ttctcttgaagaaattggcttcttatccttttatgacttggttggtcatgaga |
142 |
Q |
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||||||||||||||||||||| || ||||| ||||||||||||||| |||||| |
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| T |
49532021 |
ttctcttgaagaaattggcttgttgtccttctatgacttggttggtgatgaga |
49531969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 49701828 - 49701783
Alignment:
| Q |
90 |
ttctcttgaagaaattggcttcttatccttttatgacttggttggt |
135 |
Q |
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|||||||||||||| ||||||||||||||| ||| ||||||||||| |
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| T |
49701828 |
ttctcttgaagaaactggcttcttatccttctattacttggttggt |
49701783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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