View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13126_low_11 (Length: 252)
Name: NF13126_low_11
Description: NF13126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13126_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 44155576 - 44155358
Alignment:
| Q |
1 |
tatctgatgatcgcattcttttcaaaaaactttcctcaccaactttcacttcacctctcatgatgaactctttcaagcacttgacacctgacaacttgac |
100 |
Q |
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| T |
44155576 |
tatctgatgatcgcattcttttcaaaaaactttcctcaccaactttcacttcacctctcatgatgaactctttcaagcacttgacacctgacaacttgac |
44155477 |
T |
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| Q |
101 |
tggcttcaatagaaaaactctgctccttcctccagacacctgcaaatcagagtgagagtaaaactattaagaagcaggactagaaataccggccacataa |
200 |
Q |
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| T |
44155476 |
tgg------------aactctgctccttcctccagacacctgcaaatcagagtgagagtaaaactattaagaagcaggactagaaataccggccacataa |
44155389 |
T |
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| Q |
201 |
aagcataaacacttaatgcagcgatagttat |
231 |
Q |
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| T |
44155388 |
aagcataaacacttaatgcagcgatagttat |
44155358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 40894330 - 40894457
Alignment:
| Q |
94 |
acttgactggcttcaatagaaaaac-tctgctccttcctccagacacctgcaaatcagagtgagagtaaaactattaagaagcaggactagaaataccgg |
192 |
Q |
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| T |
40894330 |
acttgactggcttcaatagaaaaacctctgctccttcctccaggcacctgcaaatcag--tgagagtaaaactattaagaagcatgactagaaatattgg |
40894427 |
T |
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| Q |
193 |
ccacataaaagcataaacacttaatgcagc |
222 |
Q |
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| T |
40894428 |
ccacataaaagcataaacacttaatgcagc |
40894457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 44214638 - 44214434
Alignment:
| Q |
2 |
atctgatgatcgcattcttttcaaaaaactttcctcaccaactttcacttcacctctcatgatgaactctttcaagcacttgacacctgacaacttgact |
101 |
Q |
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||||||||||||||||||||| | | ||| || ||| ||| | ||||||||||||||||||||||| ||||||| || | ||| ||||||| |||||| |
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| T |
44214638 |
atctgatgatcgcattcttttgagagaacatttctcgccatccttcacttcacctctcatgatgaaatctttcaggcgtcttacatctgacaatttgact |
44214539 |
T |
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| Q |
102 |
ggcttcaatagaaaa-actctgctccttcctccagacacctgcaaatcagagtgagagtaaaactattaagaagcaggactagaaataccggccacataa |
200 |
Q |
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||||| || | |||| ||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||||| || |||| |||||| ||| |
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| T |
44214538 |
ggctttaacaaaaaatcctctgctccttcctccaaacacctgcaaat--tagtgaaaataaaactattaagaagcaggacaggatatactggccacctaa |
44214441 |
T |
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| Q |
201 |
aagcata |
207 |
Q |
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|||||| |
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| T |
44214440 |
tagcata |
44214434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 40894279 - 40894326
Alignment:
| Q |
28 |
aactttcctcaccaactttcacttcacctctcatgatgaactctttca |
75 |
Q |
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|||||| ||||||| |||| |||||||||||||||||||| ||||||| |
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| T |
40894279 |
aacttttctcaccatcttttacttcacctctcatgatgaaatctttca |
40894326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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