View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13126_low_13 (Length: 241)
Name: NF13126_low_13
Description: NF13126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13126_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 53018311 - 53018185
Alignment:
| Q |
1 |
ctcgtcctccacggtctgatcaaaatcggaatcaatctcatcccgactccattgggtctgtcacaaattattgagtctcttttgagacaacttttttctt |
100 |
Q |
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| T |
53018311 |
ctcgtcctccacggtctgatcaaaatcggaatcaatctcatcctgactccattgggt--gtcacaaattattgagtctcttttgagacaacttttttctt |
53018214 |
T |
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| Q |
101 |
ctggtaatactcctgccgctctttccact |
129 |
Q |
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| T |
53018213 |
ctgataatgctcctgccgctctttccact |
53018185 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 53008090 - 53008022
Alignment:
| Q |
160 |
cattctaaattaagattttaatatgagtggagtctgtagtgtgtctttgtcaagtccagagtaatggccta |
230 |
Q |
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| T |
53008090 |
cattctaaattaagattttaat--gagtggagtctgtagcgtgtctttgtcaagtccagagtaatggccta |
53008022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 16502007 - 16502083
Alignment:
| Q |
70 |
attgagtctcttttgagacaacttttttcttctggtaatactcctgccgctctttccactacaccatgtaattctaa |
146 |
Q |
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| T |
16502007 |
attgagtctcttctcagacaacttcttccttctggtaatactctggccgctctttctaccacaccaggtaattctaa |
16502083 |
T |
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