View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13126_low_3 (Length: 718)
Name: NF13126_low_3
Description: NF13126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13126_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 676; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 18 - 713
Target Start/End: Complemental strand, 26512 - 25818
Alignment:
| Q |
18 |
agtagcttgcaatggtttcaagtacgtatccataccttagctatcttcaacatactggtttcaaagtgtatgttatgttatcctctcttaggcatattta |
117 |
Q |
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| T |
26512 |
agtagcttgcaatggtttcaagtacgtatccataccctagctatcttcaacatactggtttcaaagtgtatgttatgttatcctctcttaggcatattta |
26413 |
T |
|
| Q |
118 |
tttacttcttctacacaaatttgcagcattctacttccagacttatttcgcggaaatccatggacaaaggaccagccaaacactcagtttgaacaatgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26412 |
tttacttcttctacacaaatttgcagcattctacttccagacttatttcgtggaaatccatggacaaaggaccagccaaacactcagtttgaacaatgga |
26313 |
T |
|
| Q |
218 |
ttactggacataaccctgagaggattgcaaaagacattaccgcgtggacagagtggctggcagatgaattcatgactgaaggagtttccagaaaacttgg |
317 |
Q |
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| T |
26312 |
ttactggacataaccctgagaggattgcaaaagacattaccgcgtggacagagtggctggcagatgaattcatgactgaaggagtttccagaaaacttgg |
26213 |
T |
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| Q |
318 |
cataattggtttttgctttggaggaggcaaagtgttagaggtcctagcccaagaccaagatgcttgcttcggcactggaatctccttttatggtacaagg |
417 |
Q |
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| T |
26212 |
cataattggtttttgctttggaggaggcaaagtgttagaggtcctagcccaagaccaagatgcttgcttcggcactggaatctccttttatggtacaagg |
26113 |
T |
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| Q |
418 |
atagattcgcttgttgcttctgatgtaaaagttcccgtcttgtttattttaggggacaatgacccaatttgtgctgtaagtgaaataaaaaatattcaga |
517 |
Q |
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| T |
26112 |
atagattcgcttgttgcttctgatgtaaaagttcccgtcttgtttattttaggggacaatgacccaatttgtgctgtaagtgaaataaaaaatattcaga |
26013 |
T |
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| Q |
518 |
ctacaattgatagtggctccaaagtagtgatattccctggtagaggtcatggatttgcccaccgacctgaatctgtggaagaagacaaggatgctgaaca |
617 |
Q |
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| T |
26012 |
ctacaattgatagtggctccaaagtagtgatattccctggtagaggtcatggatttgcccaccgacctgaatctgtggaagaagacaaggatgctgaaca |
25913 |
T |
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| Q |
618 |
agcctacgtaattatgagagactggatacatgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtctaacacttgcgtt |
713 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
25912 |
agcctacgtaattatgagagactggatacatgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtc-agcacttgcgtt |
25818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 132 - 420
Target Start/End: Complemental strand, 21352881 - 21352590
Alignment:
| Q |
132 |
acaaatttgcagcattctacttccagacttatttcgcggaaatccatggacaaaggaccagccaaacactcagtttgaacaatggattactggacataac |
231 |
Q |
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|||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||| |||||||||||||||| |||||||| | ||||||| |
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| T |
21352881 |
acaaatttgcagcattctacttcccaatttattttgcggaaatccttggacaaaggaccagcgaaacactcagtttgaaaaatggattgttacacataac |
21352782 |
T |
|
| Q |
232 |
cctgagaggattgcaaaagacattaccgcgtggacagagtggctggcagatgaattcatg---actgaaggagtttccagaaaacttggcataattggtt |
328 |
Q |
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| T |
21352781 |
ccggagaagattgcaaaagacattaccgcgtggacagaatggctgacaggtgagttcatgactactgaaggagttttcaaaaaacttggcgtaattggtt |
21352682 |
T |
|
| Q |
329 |
tttgctttggaggaggcaaagtgttagaggtcctagcccaagaccaagatgcttgcttcggcactggaatctccttttatggtacaaggata |
420 |
Q |
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| T |
21352681 |
tttgctttggacgcagcaaagtattagaggtgctaggccaagaccaagatgcttgttttggcattggactctccttttttggtacaaggata |
21352590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 549 - 712
Target Start/End: Complemental strand, 21352585 - 21352421
Alignment:
| Q |
549 |
attccctggtagaggtcatggatttgcccaccgacctgaatctgtggaagaagaca--aggatgctgaacaagcctacgtaattatgagagactggatac |
646 |
Q |
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|||||||| ||||||||| ||||||||||||||| | | |||| || | |||||| |||||||||||||||| || ||||||||||||||||||||| |
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| T |
21352585 |
attccctgatagaggtcacggatttgcccaccgatccggatctctgaacgaagacgcgaggatgctgaacaagcttatgtaattatgagagactggatat |
21352486 |
T |
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| Q |
647 |
atgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtctaacacttgcgt |
712 |
Q |
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| T |
21352485 |
ttgaacatttggtgtaaaaatgaaatgttttaagactatatgaataaaggtatc-aacacttgcgt |
21352421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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