View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13126_low_4 (Length: 686)
Name: NF13126_low_4
Description: NF13126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13126_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 670
Target Start/End: Complemental strand, 952476 - 951817
Alignment:
| Q |
19 |
gcattgatgcctgttcttaaggtactattgatcactgttcttggaacattccttgcacttgatcgttttgatatactcagtagagagactgcaaggaaaa |
118 |
Q |
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| T |
952476 |
gcattgatgcctgttcttaaggtactattgatcactgttcttggaacattccttgcacttgatcgttttgatatactcagtagagagactgcaaggaaaa |
952377 |
T |
|
| Q |
119 |
acttgaatactgtaagtttcatttcatctctttcttccattaattcataccacttgatttctcacatcattggagtgctatagagcttttcaatgaagat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
952376 |
acttgaatactgtaagtttcatttcatctctttcttccattaattcataccacttgatcactcacatcattggagtgctatagagcttttcaatggagat |
952277 |
T |
|
| Q |
219 |
tatgatattttccaaaagggacattagatatagttgatagttaaagaataaagtaaatcaattagattaagtgtgtgtttgttcacacgttaaagtgaac |
318 |
Q |
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| T |
952276 |
tatgatattttccaaaagggacattagatatagttgatagttaaggaataaagttaatgaacgagattaagtgtgtgtttgttcacacgttaaagtgaac |
952177 |
T |
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| Q |
319 |
g------tacgtttcaatgaaac----atataaagttttttgaaattgcatcaaaattaatcgtgggacgcggtattagcaattaaaacgtagaagctat |
408 |
Q |
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| T |
952176 |
gcagacataagtttcaatgaaactaggatataaagttttttgaaattgcatcaaaattaattgtgggacgcggtattagcaattaaaacgtacaagctat |
952077 |
T |
|
| Q |
409 |
aagaaaattgaaagagactatct-atacacatggatcactcacatcacaaaagaaatgagnnnnnnnnnnnaccttaaagttattaaaagccaccaagat |
507 |
Q |
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| T |
952076 |
aagaaaattgaaagagactacctgatacacatggatcactcacatcacaaaagaaatgag--tttttttttaccttaaagttattaaaagccaccaaaat |
951979 |
T |
|
| Q |
508 |
atactttttatataattttttccttctaagtttgtctctctttggatttgccaacagggcatttagccattatacaaatctaaatactgatccaatctca |
607 |
Q |
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| T |
951978 |
ctactttttatataattttttccttctaagtttgtctctctttggatttgccaacagggcatttagccattatacaaatctaaatactgatccaatctca |
951879 |
T |
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| Q |
608 |
agttgtcgtggtttcattccctcaaaaaataaaagttatcgtggtttcatatttgatatgttg |
670 |
Q |
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| T |
951878 |
agttgtcgtggtttcattccctcaaaaaa-aaaagttatcgtggtttcatatttaacatgttg |
951817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 1099462 - 1099718
Alignment:
| Q |
19 |
gcattgatgcctgttcttaaggtactattgatcactgttcttggaacattccttgcacttgatcgttttgatatactcagtagagagactgcaaggaaaa |
118 |
Q |
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| T |
1099462 |
gcattgatgcctgttcttaaggtactattgatcactgttcttggaacattccttgcacttgatcgttttgatatactcagtagagagactgcaaggaaaa |
1099561 |
T |
|
| Q |
119 |
acttgaatactgtaagtttcatttcatctctttcttccattaattcataccacttgatttctcacatcattggagtgctatagagcttttcaatgaagat |
218 |
Q |
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| T |
1099562 |
acttgaatactgtaagtttcatttcatctctttcttccattaattcataccacttgatcactcacatcattggagtgctatagagcttttcaatggagat |
1099661 |
T |
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| Q |
219 |
tatgatattttccaaaagggacattagatatagttgatagttaaagaataaagtaaat |
276 |
Q |
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| T |
1099662 |
tatgatattttccaaaagggacattagatatagttgatagttaaa-aataaagtaaat |
1099718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 554
Target Start/End: Original strand, 1099821 - 1099897
Alignment:
| Q |
479 |
accttaaagttatt-aaaagccaccaagatatactttttatataattttttccttctaagtttgtctctctttggat |
554 |
Q |
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| T |
1099821 |
accttaaagttttttaaaagccacaaaaatctactttttatataatttttttcttttaaatttgtccctctttggat |
1099897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 400
Target Start/End: Original strand, 10677768 - 10677885
Alignment:
| Q |
291 |
gtgtgtttgttcacacgttaaagtgaac------gtacgtttcaatgaaacat--ataaagttttttgaaattgcatcaaaattaatcgtgggacgcggt |
382 |
Q |
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|||||| ||||||||||||||||||||| || | |||||||||| || ||||||||| || |||||||||||||||| | |||||| |||| |
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| T |
10677768 |
gtgtgtctgttcacacgttaaagtgaacacagatgtgcatttcaatgaagcaaggataaagtttcttaaaattgcatcaaaattgacattgggacacggt |
10677867 |
T |
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| Q |
383 |
attagcaattaaaacgta |
400 |
Q |
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| T |
10677868 |
attagcaattaaaacgta |
10677885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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