View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13126_low_5 (Length: 655)
Name: NF13126_low_5
Description: NF13126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13126_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 263 - 536
Target Start/End: Original strand, 52594334 - 52594606
Alignment:
| Q |
263 |
ctaaacaaaaccgacgcttgtattgttactttcaaacttaacttaaacctcaagtaaacactaaacagccactttcgtccttgaaaatgataagaggtat |
362 |
Q |
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| T |
52594334 |
ctaaacaaaaccgacgcttgtattgttactttgaaacttaacttaaacctcaagtaaacactaaacagccactttcgtccttgaaaatgataagaggtat |
52594433 |
T |
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| Q |
363 |
caaaaaggctccctatcnnnnnnnnnnnntacttataaactcctcaaatttagcttttgttgggtatattggttgagacgttaaaatagtgttaattcaa |
462 |
Q |
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| T |
52594434 |
caaaaaggctccctatcaaaaataaaaaatacttataagctcctcaaatttagcttttgttgggtatattggttgagacgttaaaatagtgttaattcaa |
52594533 |
T |
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| Q |
463 |
ggtcaaatatttgttaccaaacaacatgcatatgccgcaagtttccattgtaactaacatgcaaattcaaggaa |
536 |
Q |
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| T |
52594534 |
ggtcaaatatttgttaccaaac-acatgcatatgccgcaagtttccattgtaactaacatgcaaattcaaggaa |
52594606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 52594096 - 52594283
Alignment:
| Q |
19 |
ggattctctatacggagttggtgaaagtgacaaattcacgcg--tcagacggtttcctgttttgtatcgcaactgcaaatgactacgttcgttcccttat |
116 |
Q |
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| T |
52594096 |
ggattctctatacggagttggtgaaagtgacaaattcacgcgagtcagacggtttcctgttttgtatcgcaactgcaaatgactacgttcgttcccttat |
52594195 |
T |
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| Q |
117 |
actaccagcagcaggttatgtgctcatccatacacaatctactcttcatgacattttctattcattccaatggtgggtgggacctctc |
204 |
Q |
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| T |
52594196 |
actaccagcagcaggttatgtgctcatccatacacaatctactcttcatgacattttctatccattccaatggtgggtgggacctctc |
52594283 |
T |
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