View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13126_low_9 (Length: 300)

Name: NF13126_low_9
Description: NF13126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13126_low_9
NF13126_low_9
[»] chr5 (4 HSPs)
chr5 (1-259)||(2017985-2018243)
chr5 (191-256)||(32389626-32389691)
chr5 (191-246)||(18175227-18175282)
chr5 (206-255)||(28758425-28758474)
[»] chr4 (14 HSPs)
chr4 (191-256)||(49056788-49056853)
chr4 (222-256)||(35851724-35851758)
chr4 (199-256)||(1458018-1458075)
chr4 (207-256)||(21442637-21442686)
chr4 (191-256)||(22433363-22433428)
chr4 (191-256)||(27091464-27091529)
chr4 (191-256)||(30057235-30057300)
chr4 (191-256)||(32339337-32339402)
chr4 (191-255)||(38433322-38433386)
chr4 (191-256)||(40051635-40051700)
chr4 (191-256)||(41137912-41137977)
chr4 (199-256)||(53572327-53572384)
chr4 (199-259)||(9661560-9661620)
chr4 (211-255)||(10042430-10042474)
[»] chr2 (9 HSPs)
chr2 (188-256)||(30392821-30392889)
chr2 (194-256)||(23919472-23919534)
chr2 (199-256)||(15233426-15233483)
chr2 (191-256)||(23405209-23405274)
chr2 (203-256)||(28202307-28202360)
chr2 (203-256)||(33424323-33424376)
chr2 (203-259)||(9375104-9375160)
chr2 (199-255)||(14663998-14664054)
chr2 (199-255)||(19612729-19612785)
[»] chr1 (10 HSPs)
chr1 (204-256)||(4865827-4865879)
chr1 (193-256)||(31401239-31401302)
chr1 (191-256)||(11333677-11333742)
chr1 (191-256)||(11491698-11491763)
chr1 (204-256)||(10292946-10292998)
chr1 (191-246)||(3229706-3229761)
chr1 (199-256)||(6702589-6702646)
chr1 (199-256)||(15775752-15775809)
chr1 (222-255)||(17517027-17517060)
chr1 (191-256)||(36666568-36666633)
[»] scaffold0330 (1 HSPs)
scaffold0330 (191-256)||(6781-6846)
[»] chr8 (6 HSPs)
chr8 (191-256)||(12770381-12770446)
chr8 (197-248)||(12510433-12510484)
chr8 (191-256)||(11231433-11231498)
chr8 (211-256)||(20872470-20872515)
chr8 (199-256)||(42880961-42881018)
chr8 (204-256)||(23435238-23435290)
[»] chr7 (10 HSPs)
chr7 (191-256)||(3392480-3392545)
chr7 (191-256)||(10244881-10244946)
chr7 (191-256)||(30806128-30806193)
chr7 (199-256)||(41854010-41854067)
chr7 (191-259)||(12935750-12935818)
chr7 (222-256)||(40518912-40518946)
chr7 (199-256)||(12640589-12640646)
chr7 (199-256)||(15106691-15106748)
chr7 (191-256)||(45284811-45284876)
chr7 (199-255)||(31769512-31769568)
[»] chr3 (4 HSPs)
chr3 (191-256)||(52309102-52309167)
chr3 (222-256)||(35718579-35718613)
chr3 (223-255)||(11995145-11995177)
chr3 (212-256)||(36763442-36763486)
[»] scaffold0519 (1 HSPs)
scaffold0519 (191-256)||(2954-3019)
[»] scaffold0445 (1 HSPs)
scaffold0445 (199-256)||(4014-4071)
[»] chr6 (5 HSPs)
chr6 (191-256)||(2488878-2488943)
chr6 (199-256)||(27218897-27218954)
chr6 (199-256)||(30938401-30938458)
chr6 (224-256)||(10999160-10999192)
chr6 (211-259)||(30527772-30527820)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 2018243 - 2017985
Alignment:
Q  1 gcaatggaggttttctatgacatcatcttttctttcttaatagcccatggtgtttgtggagggttatagaacttaattggtatgaattatgggataagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2018243 gcaatggaggttttctatgacatcatcttttctttcttaatagcccatggtgtttgtggaaggttatagaacttaattggtatgaattatgggataagaa 2018144  T
Q  101 gtgagattttttagttcaatttcttagttcaaacataaatcgtaggagagtattttatattttttattgggtcagggagacttaaa-taacaagtgggat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  2018143 gtgagattttttagttcaatttcttagttcaaacataaatcgtaggagagtattttatattttttattgggtcaaggagacttaaagtaacaagtgggat 2018044  T
Q  200 gtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagata 259  Q
    |||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  2018043 gtct-gggttagaactccgtcttctacatatattatacaatgtccctatcaactgagata 2017985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 32389626 - 32389691
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||||||  ||||||||||| |||||||||||| |||||||| || ||| ||||||||    
T  32389626 aagtggggtgtctggaatttgaactccgactcctacatataatatgcaatatctctaccaactgag 32389691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 18175282 - 18175227
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccct 246  Q
    ||||||||||||||||||| |||| ||| | |||||||||| ||||||| ||||||    
T  18175282 aagtgggatgtctggggttcgaaccccgacccctacatataatatgcaacgtccct 18175227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 28758425 - 28758474
Alignment:
Q  206 ggtttgaactccgtctcctacatatattatgcaatgtccctatcaactga 255  Q
    ||||||||| ||| ||||| |||| ||||||||||||||||| |||||||    
T  28758425 ggtttgaaccccgactcctgcataaattatgcaatgtccctaccaactga 28758474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 49056853 - 49056788
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||| |||||| |||||||| ||||| |||||| ||||||||||||||| ||||||||    
T  49056853 aagtggggtgtccggggttcgaactccggctcctgcatataatatgcaatgtccctaccaactgag 49056788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 35851724 - 35851758
Alignment:
Q  222 cctacatatattatgcaatgtccctatcaactgag 256  Q
    |||||||||||||||||||||||||| ||||||||    
T  35851724 cctacatatattatgcaatgtccctaccaactgag 35851758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 1458018 - 1458075
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||| |||||| |||| ||| ||||| |||||| |||||||| |||||||||||||||    
T  1458018 tgtccggggttcgaaccccggctcctgcatataatatgcaatatccctatcaactgag 1458075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 21442637 - 21442686
Alignment:
Q  207 gtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||| ||||| | | |||||||||||||||||||||||||||    
T  21442637 gtttgaattccgactccttcctctattatgcaatgtccctatcaactgag 21442686  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 22433363 - 22433428
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||||| |||| || |||| |||||| | | ||| ||||||||||||||||| |||||||||||||    
T  22433363 aagtggaatgtttgaggttcgaactctgaccccttcatatattatgcaatgttcctatcaactgag 22433428  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 27091464 - 27091529
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||||||||||| |||||| |||||||| | ||| || | ||||| ||||||||||| ||||||||    
T  27091464 aagtgggatgtccggggttcgaactccgacccctgcagaaattatacaatgtccctaccaactgag 27091529  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 30057300 - 30057235
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||| ||||||||||| ||| | ||| |||||| |||||||| |||||| ||||||||    
T  30057300 aagtggggtgtccggggtttgaaccccgacccctgcatataatatgcaatatccctaccaactgag 30057235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 32339402 - 32339337
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||||||||||||||| ||| | | | |||||| |||||||| |||||| ||||||||    
T  32339402 aagtggggtgtctggggtttgaaccccgacccttgcatataatatgcaatatccctaacaactgag 32339337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 38433386 - 38433322
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatat-attatgcaatgtccctatcaactga 255  Q
    ||||||| ||||||||||| |||||||| ||||||||||| || ||||| ||| ||||||||||||    
T  38433386 aagtggggtgtctggggttcgaactccgactcctacatataataatgcattgt-cctatcaactga 38433322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 40051700 - 40051635
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| ||||||||||| |||| ||  | |||||||||| |||||||| |||||| ||||||||    
T  40051700 aagtggggtgtctggggttcgaacccctacccctacatataatatgcaatatccctaccaactgag 40051635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 41137912 - 41137977
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||||| |||| |||| ||  | ||| |||||||||||||||||||||| ||||||||    
T  41137912 aagtggggtgtctgtggttcgaaccccaacccctgcatatattatgcaatgtccctaccaactgag 41137977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 53572327 - 53572384
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||| ||||||||||  ||| ||||| |||||| |||||||| |||||||||||||||    
T  53572327 tgtccggggtttgaatcccggctcctgcatataatatgcaatatccctatcaactgag 53572384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 9661620 - 9661560
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagata 259  Q
    |||| |||||| |||||||| ||| |||||||| |||||||| ||| || |||||||||||    
T  9661620 tgtccggggttcgaactccgactcttacatataatatgcaatatccataccaactgagata 9661560  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 10042430 - 10042474
Alignment:
Q  211 gaactccgtctcctacatatattatgcaatgtccctatcaactga 255  Q
    |||||||| |||||||||||| |||||||| |||||| |||||||    
T  10042430 gaactccgactcctacatataatatgcaatatccctaccaactga 10042474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 30392821 - 30392889
Alignment:
Q  188 aacaagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||||||||  ||||||||||| |||| ||| |||||||||||| |||||||| |||||| ||||||||    
T  30392821 aacaagtggagtgtctggggttcgaaccccgactcctacatataatatgcaatatccctaccaactgag 30392889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 23919472 - 23919534
Alignment:
Q  194 tgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||| |||||||| || |||| ||| | ||| |||||||||||||||||||||| ||||||||    
T  23919472 tggggtgtctgggattcgaaccccgacccctccatatattatgcaatgtccctaccaactgag 23919534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 15233483 - 15233426
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||||||||||||||||||| | ||| |||||| |||||||| |||||| ||| ||||    
T  15233483 tgtctggggtttgaactccggcccctgcatataatatgcaatatccctaccaattgag 15233426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 23405274 - 23405209
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| ||||  ||||| |||| ||| | ||| |||||||||||||||||||||| ||||||||    
T  23405274 aagtggggtgtccagggttcgaaccccgacccctgcatatattatgcaatgtccctaccaactgag 23405209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 28202360 - 28202307
Alignment:
Q  203 tggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||||||||| ||   | ||||||||||||||| |||||||||||||||||    
T  28202360 tggggtttgaacttcggaccttacatatattatgcattgtccctatcaactgag 28202307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 33424323 - 33424376
Alignment:
Q  203 tggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||||||||||||  || | ||||||||||||| |||||||||||| ||||    
T  33424323 tggggtttgaactccgaatcttgcatatattatgcactgtccctatcaattgag 33424376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 9375104 - 9375160
Alignment:
Q  203 tggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagata 259  Q
    ||||||| |||| ||| | ||||||||||||||||||||| |||  |||||||||||    
T  9375104 tggggttcgaaccccgacccctacatatattatgcaatgttcctgccaactgagata 9375160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 14664054 - 14663998
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactga 255  Q
    |||| ||||||||||||| | | ||| |||| ||||||||||||||||| |||||||    
T  14664054 tgtccggggtttgaactctggcccctgcataaattatgcaatgtccctaccaactga 14663998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 19612785 - 19612729
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactga 255  Q
    ||||||||||| |||| ||  |||||||||||| |||||||| |||||| |||||||    
T  19612785 tgtctggggttcgaaccccagctcctacatataatatgcaatatccctaccaactga 19612729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 4865827 - 4865879
Alignment:
Q  204 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||||||||    
T  4865827 ggggttcgaactccgacccctacatatattatgcaatgtccctaccaactgag 4865879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 31401239 - 31401302
Alignment:
Q  193 gtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||| |||| |||||||||||  || ||||| |||| ||||||||||||||||||||||||||    
T  31401239 gtggggtgtccggggtttgaacctcggctcctgcataaattatgcaatgtccctatcaactgag 31401302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 11333742 - 11333677
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||| |||||| |||||||| | ||| |||| ||||||||||||||||| ||||||||    
T  11333742 aagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaactgag 11333677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 11491763 - 11491698
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||| |||||| |||||||| | ||| |||| ||||||||||||||||| ||||||||    
T  11491763 aagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaactgag 11491698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 10292998 - 10292946
Alignment:
Q  204 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| ||| ||||| | ||||||||||||||| |||||||||||||||||    
T  10292998 ggggtttaaaccccgtcccttacatatattatgcattgtccctatcaactgag 10292946  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 3229706 - 3229761
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccct 246  Q
    |||||||||||| ||||||||||| ||  | |||||||||||||||||| ||||||    
T  3229706 aagtgggatgtccggggtttgaaccccaacccctacatatattatgcaacgtccct 3229761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 6702646 - 6702589
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| ||||||||    
T  6702646 tgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgag 6702589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 15775809 - 15775752
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||||||| |||||||| ||||| |||||| |||||||| |||||| ||| ||||    
T  15775809 tgtctggggttcgaactccggctcctgcatataatatgcaatatccctaccaattgag 15775752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 17517027 - 17517060
Alignment:
Q  222 cctacatatattatgcaatgtccctatcaactga 255  Q
    ||||||||||||||| ||||||||||||||||||    
T  17517027 cctacatatattatgtaatgtccctatcaactga 17517060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 36666568 - 36666633
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| ||||||||||||||||| ||||||||    
T  36666568 aagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgag 36666633  T

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Target: scaffold0330 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 6846 - 6781
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||||||| ||||||| ||||  || |||||||||||| |||||||| |||||| ||||||||    
T  6846 aagtgggatgtttggggttcgaacctcgactcctacatataatatgcaatatccctaccaactgag 6781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 12770446 - 12770381
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| ||||||||||||||||||||||||||    
T  12770446 aagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctatcaactgag 12770381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 12510433 - 12510484
Alignment:
Q  197 gatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctat 248  Q
    |||||||| |||| |||||||| | | |||||||||||||||||||||||||    
T  12510433 gatgtctgaggttcgaactccgacccatacatatattatgcaatgtccctat 12510484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 11231498 - 11231433
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| |||||||||||||||| |||||||||    
T  11231498 aagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctttcaactgag 11231433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 20872470 - 20872515
Alignment:
Q  211 gaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||||||| | ||| |||| ||||||||||||||||||||||||||    
T  20872470 gaactccgacccctgcataaattatgcaatgtccctatcaactgag 20872515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 42881018 - 42880961
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||| |||||| |||| ||| |||||||||||| |||||||| |||||| ||||||||    
T  42881018 tgtccggggttcgaaccccggctcctacatataatatgcaatatccctaccaactgag 42880961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 23435238 - 23435290
Alignment:
Q  204 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||||| |||| ||| ||||| |||||| |||||||| |||||||||||||||    
T  23435238 ggggttcgaaccccggctcctgcatataatatgcaatatccctatcaactgag 23435290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 3392545 - 3392480
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| ||||||||||| |||| ||| | |||||||||| |||||||| ||| |||||||||||    
T  3392545 aagtggggtgtctggggttcgaaccccgacccctacatataatatgcaatatccatatcaactgag 3392480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 10244881 - 10244946
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||| |||||| |||| ||| |||||||||||| |||||||| |||||| ||||||||    
T  10244881 aagtggggtgtccggggttcgaaccccggctcctacatataatatgcaatatccctaccaactgag 10244946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 30806193 - 30806128
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||||||||||| |||||| |||||||| | ||| |||||| |||||||| |||||| ||||||||    
T  30806193 aagtgggatgtccggggttcgaactccgacccctgcatataatatgcaatatccctaccaactgag 30806128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 41854067 - 41854010
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||| ||||||||||||||||| ||| |||| ||||||||||||||||  ||||||||    
T  41854067 tgtccggggtttgaactccgtcccctgcataaattatgcaatgtccctgccaactgag 41854010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 12935818 - 12935750
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagata 259  Q
    |||||||  |||||||||| |||| || || |||||||| ||||||||||||||||  |||||||||||    
T  12935818 aagtggggcgtctggggttcgaaccccatcccctacataaattatgcaatgtccctgccaactgagata 12935750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 40518912 - 40518946
Alignment:
Q  222 cctacatatattatgcaatgtccctatcaactgag 256  Q
    |||||||||||||||||||||||||| ||||||||    
T  40518912 cctacatatattatgcaatgtccctaccaactgag 40518946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 12640589 - 12640646
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| ||||||||    
T  12640589 tgtctggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgag 12640646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 15106691 - 15106748
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| ||||||||    
T  15106691 tgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgag 15106748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 45284811 - 45284876
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| ||||| ||||||||||||||||||||    
T  45284811 aagtggggtgtccggggttcgaaccccgacccctgcataaattattcaatgtccctatcaactgag 45284876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 31769512 - 31769568
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactga 255  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||    
T  31769512 tgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactga 31769568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 52309102 - 52309167
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| ||||||||    
T  52309102 aagtggggtgtctggggttcgaaccccgactcctgcatatagtatgcaatatccctaccaactgag 52309167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 35718579 - 35718613
Alignment:
Q  222 cctacatatattatgcaatgtccctatcaactgag 256  Q
    |||||||||||||||||||||||||| ||||||||    
T  35718579 cctacatatattatgcaatgtccctaccaactgag 35718613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 11995177 - 11995145
Alignment:
Q  223 ctacatatattatgcaatgtccctatcaactga 255  Q
    ||||||| |||||||||||||||||||||||||    
T  11995177 ctacataaattatgcaatgtccctatcaactga 11995145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 36763486 - 36763442
Alignment:
Q  212 aactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| | ||| |||||||||||||||||||||| ||||||||    
T  36763486 aactccggcccctgcatatattatgcaatgtccctaccaactgag 36763442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 2954 - 3019
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| |||||||||||||||| |||||||||    
T  2954 aagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctttcaactgag 3019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 4014 - 4071
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| ||||||||    
T  4014 tgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgag 4071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 2488878 - 2488943
Alignment:
Q  191 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||||||||||| |||||| |||||||| | ||| || | ||||| ||||||||||| ||||||||    
T  2488878 aagtgggatgtccggggttcgaactccgacccctgcagaaattatacaatgtccctaccaactgag 2488943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 27218954 - 27218897
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    |||| |||||| |||  ||| |||||||||||| |||||||| |||||||||||||||    
T  27218954 tgtccggggttcgaatcccggctcctacatataatatgcaatatccctatcaactgag 27218897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 30938458 - 30938401
Alignment:
Q  199 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||||||| |||| |||   ||| |||||||||||||||||||||| ||||||||    
T  30938458 tgtctggggttcgaaccccggtccctgcatatattatgcaatgtccctaccaactgag 30938401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 10999192 - 10999160
Alignment:
Q  224 tacatatattatgcaatgtccctatcaactgag 256  Q
    ||||||||||||||||||||| |||||||||||    
T  10999192 tacatatattatgcaatgtccttatcaactgag 10999160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 30527820 - 30527772
Alignment:
Q  211 gaactccgtctcctacatatattatgcaatgtccctatcaactgagata 259  Q
    |||||||  |||||| |||||||||||||| |||||||||| |||||||    
T  30527820 gaactccaactcctatatatattatgcaatatccctatcaattgagata 30527772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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