View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13127_high_2 (Length: 250)
Name: NF13127_high_2
Description: NF13127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13127_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 40764140 - 40764380
Alignment:
| Q |
7 |
tagattattctaaagatttctttgcccgtcaagcatttttgactgtttctggtcagcttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatac |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764140 |
tagattatgctaaagatttctttgcccgtcaagcatttttgactgtttctggtcagcttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatac |
40764239 |
T |
|
| Q |
107 |
atttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcagacttggaggta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764240 |
atttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcagacttggaggta |
40764339 |
T |
|
| Q |
207 |
tataaaaaggaacacactatctggttatgattattctcatc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764340 |
tataaaaaggaacacactatctggttatgattattctcatc |
40764380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 42911789 - 42912029
Alignment:
| Q |
9 |
gattattctaaagatttctttgcccgtcaagcatttttgactgtttctggtcagcttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatacat |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
42911789 |
gattatactaaagatttctttgcccgtcaagcgtttttgactgtttctggtcagcttcaagttgagtcttatgcttgtgctcttagtcgcgtgtatacat |
42911888 |
T |
|
| Q |
109 |
ttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcagacttggaggtata |
208 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42911889 |
ttggcccgacatttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcagacttggaggtata |
42911988 |
T |
|
| Q |
209 |
taaaaaggaacacact----atctggttatgattattctca |
245 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
42911989 |
taaaaatgaacacacactcaatcttgttatgattattctca |
42912029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 41661999 - 41661931
Alignment:
| Q |
99 |
gtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttgg |
167 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
41661999 |
gtgtatacatttggtcccacatttcgagcagagaattctaacacttccaggcacttggctgaattttgg |
41661931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University