View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13127_low_3 (Length: 221)
Name: NF13127_low_3
Description: NF13127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13127_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 40765177 - 40764974
Alignment:
| Q |
18 |
aattatagactatgacaggcttcttctgatacttcacctctgttaggtatctgcatatcataacccaaaggcatgagatgaaacaacacaacttaataag |
117 |
Q |
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| T |
40765177 |
aattatagactatgacaggcttcttctgatacttcacctctgttaggtatctgcatatcataacccaaaggcatgagatgaaacaacacaacttaataag |
40765078 |
T |
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| Q |
118 |
aggagtgataagctggcttggtggttacatagggcagagcagcaaggactatggttcaactccacacattcaaaaaagtaacaaccaacatttatcattg |
217 |
Q |
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| T |
40765077 |
aggagtgataagctggcttggtggttacatagggcagagcagcaaggaccatggttcaactccacacattcactaaagtaacaaccaacatttatcattg |
40764978 |
T |
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| Q |
218 |
aaga |
221 |
Q |
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|||| |
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| T |
40764977 |
aaga |
40764974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 42912736 - 42912677
Alignment:
| Q |
18 |
aattatagactatgacaggcttcttctgatacttcacctctgttaggtatctgcatatcataa |
80 |
Q |
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| T |
42912736 |
aattatagacaatgacaggcttct---gatacttaacctctgttaggtatctgcatatcataa |
42912677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 42912588 - 42912546
Alignment:
| Q |
179 |
ccacacattcaaaaaagtaacaaccaacatttatcattgaaga |
221 |
Q |
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| T |
42912588 |
ccacacattcacaaaagtaacaaccaacatttatcattaaaga |
42912546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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