View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13128_high_11 (Length: 337)

Name: NF13128_high_11
Description: NF13128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13128_high_11
NF13128_high_11
[»] chr3 (5 HSPs)
chr3 (10-311)||(30915283-30915583)
chr3 (35-270)||(46607903-46608137)
chr3 (194-268)||(44204052-44204126)
chr3 (51-114)||(44204195-44204258)
chr3 (43-93)||(27423986-27424036)
[»] chr2 (3 HSPs)
chr2 (29-163)||(37095230-37095364)
chr2 (58-147)||(42305699-42305788)
chr2 (50-92)||(37330539-37330581)
[»] chr6 (2 HSPs)
chr6 (53-173)||(6386432-6386552)
chr6 (194-315)||(10707083-10707202)
[»] chr8 (3 HSPs)
chr8 (44-173)||(22592051-22592180)
chr8 (51-91)||(9768650-9768690)
chr8 (223-320)||(37472072-37472168)
[»] chr4 (1 HSPs)
chr4 (29-114)||(27842117-27842202)
[»] chr1 (2 HSPs)
chr1 (45-146)||(1812101-1812202)
chr1 (227-303)||(42419021-42419096)
[»] chr7 (2 HSPs)
chr7 (46-110)||(43498416-43498480)
chr7 (207-315)||(42136935-42137042)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 30915283 - 30915583
Alignment:
Q  10 attatacttttatatgttgatatcatttctcctttcacttcttcttatttaaatctaaattctcaaattcaaaaactttaaaaccaatgcatcttattgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30915283 attatacttttatatgttgatatcatttctcctttcacttcttcttatttaaatttaaattctcaaattcaaaaactttaaaaccaatgcatcttattgt 30915382  T
Q  110 tcgcagcaatgtcttcattttgcaagaatggttaaaatctaggaacttaaaacactgagtcattatttatcccagtgtgagacatgatgaatggatgctt 209  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30915383 tcgcagcaatgtcttcgttttgcaagaatggttaaaatctaggaacttaaaacactgagtcattatttatcccagtgtgagacatgatgaatggatactt 30915482  T
Q  210 gagtgttattaatctctaattgtgcaacaaagcttgttgtttgcataatcacaaaatataattataaaagactacaataaaacaagaagataacttagag 309  Q
    || ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30915483 gaatgttattaatctctaattgtgcaacaaagctcgttgttcgcataatcacaaaatataa-tataaaagactacaataaaacaagaagataacttagag 30915581  T
Q  310 gc 311  Q
    ||    
T  30915582 gc 30915583  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 35 - 270
Target Start/End: Original strand, 46607903 - 46608137
Alignment:
Q  35 tttctcctttcacttcttcttatttaaatctaaattctcaaattcaaaaactttaaaaccaatgcatcttattgttcgcagcaatgtcttcattttgcaa 134  Q
    |||||||| |||| |||||||||||||||||| |||||||||| ||||||| ||||||| || | |||| |||||| ||| |||||||||||||| |       
T  46607903 tttctcctctcacctcttcttatttaaatctatattctcaaatccaaaaacgttaaaacaaaagtatctcattgtttgcaacaatgtcttcatttagtct 46608002  T
Q  135 gaatggttaaaatctaggaacttaaaac-actgagtcattatttatcccagtgtgagacatgatgaatggatgcttgagtgttattaatctctaattgtg 233  Q
     ||| |||||||| || || | |||||| | ||||||||| | ||| | |||||||||  ||||||||| |  ||||| |||| || |||||||||||||    
T  46608003 aaatagttaaaatttacgatcctaaaacaattgagtcatt-tatat-ctagtgtgagaagtgatgaatgaaaacttgaatgttgttcatctctaattgtg 46608100  T
Q  234 caacaaagcttgttgtttgcataatcacaaaatataa 270  Q
    ||||||| ||| | |||  ||  ||||||||||||||    
T  46608101 caacaaaacttatagttcacaccatcacaaaatataa 46608137  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 44204126 - 44204052
Alignment:
Q  194 tgatgaatggatgcttgagtgttattaatctctaattgtgcaacaaagcttgttgtttgcataatcacaaaatat 268  Q
    |||||||||||| ||||| ||||||| |||||||||| || |||||||||||| |||  || ||||||| |||||    
T  44204126 tgatgaatggatacttgaatgttattcatctctaattatgtaacaaagcttgtggttcacacaatcacataatat 44204052  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 44204258 - 44204195
Alignment:
Q  51 ttcttatttaaatctaaattctcaaattcaaaaactttaaaaccaatgcatcttattgttcgca 114  Q
    ||||||||||||||||||||||   ||| ||||||||||||||||| | |||| || |||||||    
T  44204258 ttcttatttaaatctaaattctttgattgaaaaactttaaaaccaaagtatctcatcgttcgca 44204195  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 27424036 - 27423986
Alignment:
Q  43 ttcacttcttcttatttaaatctaaattctcaaattcaaaaactttaaaac 93  Q
    ||||||| |||||  |||||||||||||||||||| ||||||| |||||||    
T  27424036 ttcacttattctttcttaaatctaaattctcaaatccaaaaaccttaaaac 27423986  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 37095230 - 37095364
Alignment:
Q  29 atatcatttctcctttcacttcttcttatttaaatctaaattctcaaattcaaaaactttaaaaccaatgcatcttattgttcgcagcaatgtcttcatt 128  Q
    |||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| ||| ||| ||  |||| |||  ||    
T  37095230 atatcatttctcctctcgcttcttcttatttaaatttaaattctcaaatccaaaaactttaaaaccaatgtatctcattcttcccaaaaatgcctttgtt 37095329  T
Q  129 ttgcaagaatggttaaaatctaggaacttaaaaca 163  Q
    ||| ||||||||||||||| || |||| |||||||    
T  37095330 ttgtaagaatggttaaaatttacgaacctaaaaca 37095364  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 42305788 - 42305699
Alignment:
Q  58 ttaaatctaaattctcaaattcaaaaactttaaaaccaatgcatcttattgttcgcagcaatgtcttcattttgcaagaatggttaaaat 147  Q
    |||||||||||||||||||| |||||||||||||||| | | |||| |||||||||| |||||| ||||||| | | |||||||||||||    
T  42305788 ttaaatctaaattctcaaatccaaaaactttaaaaccgaagtatctcattgttcgcaacaatgtgttcatttagaaggaatggttaaaat 42305699  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 37330539 - 37330581
Alignment:
Q  50 cttcttatttaaatctaaattctcaaattcaaaaactttaaaa 92  Q
    |||||||||||||||||||||||||||| |  |||||||||||    
T  37330539 cttcttatttaaatctaaattctcaaatcccgaaactttaaaa 37330581  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 6386552 - 6386432
Alignment:
Q  53 cttatttaaatctaaattctcaaattcaaaaactttaaaaccaatgcatcttattgttcgcagcaatgtcttcattttgcaagaatggttaaaatctagg 152  Q
    |||||||||||||||||||||||||  |||||||| |||||||| | |||| ||||||||||  ||||||||| ||  ||| |||| |||||||| ||      
T  6386552 cttatttaaatctaaattctcaaatctaaaaacttaaaaaccaaagtatctcattgttcgcaaaaatgtcttctttcagcaggaatcgttaaaatttaca 6386453  T
Q  153 aacttaaaacactgagtcatt 173  Q
    ||| ||||||| ||| |||||    
T  6386452 aacctaaaacaatgaatcatt 6386432  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 315
Target Start/End: Original strand, 10707083 - 10707202
Alignment:
Q  194 tgatgaatggatgcttgagtgttattaatctctaattgtgcaacaaagcttgttgtttgcataatcacaaaatataattataaaagactacaataaaaca 293  Q
    |||||||||||  | ||| |||| |||| |||||||||||||||||| ||||| ||| ||| |||||||||||||||  || |  |||||||||  ||||    
T  10707083 tgatgaatggacacctgaatgttgttaaactctaattgtgcaacaaaacttgtcgttcgcacaatcacaaaatataa--atgacggactacaatgcaaca 10707180  T
Q  294 agaagataacttagaggctaac 315  Q
    | |||||||| || ||||||||    
T  10707181 aaaagataacataaaggctaac 10707202  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 22592051 - 22592180
Alignment:
Q  44 tcacttcttcttatttaaatctaaattctcaaattcaaaaactttaaaaccaatgcatcttattgttcgcagcaatgtcttcattttgcaagaatggtta 143  Q
    |||||| |||||| |||| ||||||||||||||  |||||  ||||||||||| | |||| ||||||| || |||||||||| ||| | | |||||||||    
T  22592051 tcactttttcttaattaattctaaattctcaaacccaaaatttttaaaaccaaagtatctcattgttcacaacaatgtcttcttttagtaggaatggtta 22592150  T
Q  144 aaatctaggaacttaaaacactgagtcatt 173  Q
    | || ||  | | ||||||| |||||||||    
T  22592151 atatttacaatcctaaaacaatgagtcatt 22592180  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 9768690 - 9768650
Alignment:
Q  51 ttcttatttaaatctaaattctcaaattcaaaaactttaaa 91  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  9768690 ttcttgtttaaatctaaattctcaaattcaaaaaccttaaa 9768650  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 320
Target Start/End: Complemental strand, 37472168 - 37472072
Alignment:
Q  223 ctctaattgtgcaacaaagcttgttgtttgcataatcacaaaatataattataaaagactacaataaaacaagaagataacttagaggctaaccgtga 320  Q
    |||||||||| ||||||| ||||| ||| |||||||||   ||||||| || ||| |||||||||  ||||| ||||||||||| |  ||||||||||    
T  37472168 ctctaattgtacaacaaaacttgtggttagcataatcatctaatataacta-aaaggactacaatgcaacaaaaagataacttaaatactaaccgtga 37472072  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 27842117 - 27842202
Alignment:
Q  29 atatcatttctcctttcacttcttcttatttaaatctaaattctcaaattcaaaaactttaaaaccaatgcatcttattgttcgca 114  Q
    ||||| |||||| | | |||||||||| |||||||||||||||||||||| |||||||| ||||| || | || ||||| ||||||    
T  27842117 atatcctttctcatattacttcttcttttttaaatctaaattctcaaattgaaaaacttaaaaactaaagtattttatttttcgca 27842202  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 1812202 - 1812101
Alignment:
Q  45 cacttcttcttatttaaatctaaattctcaaattcaaaaactttaaaaccaatgcatcttattgttcgcagcaatgtcttcattttgcaagaatggttaa 144  Q
    |||||||||||  || || ||||||| ||||||||||| | |||||||||||   |||||||| |||||| ||||||||||| || ||| ||| ||||||    
T  1812202 cacttcttctttcttgaacctaaattatcaaattcaaatattttaaaaccaaattatcttattattcgcaacaatgtcttcaattagcatgaacggttaa 1812103  T
Q  145 aa 146  Q
    ||    
T  1812102 aa 1812101  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 42419096 - 42419021
Alignment:
Q  227 aattgtgcaacaaagcttgttgtttgcataatcacaaaatataattataaaagactacaataaaacaagaagataac 303  Q
    ||||||||||  || ||||| ||||||| |||||||||||||||  ||||| ||||||||| |||||||||||||||    
T  42419096 aattgtgcaattaaacttgtggtttgcacaatcacaaaatataa-cataaaggactacaatgaaacaagaagataac 42419021  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 43498416 - 43498480
Alignment:
Q  46 acttcttcttatttaaatctaaattctcaaattcaaaaactttaaaaccaatgcatcttattgtt 110  Q
    ||||||| |||||||||| |||| || ||||||||||||||||||||  || | |||||||||||    
T  43498416 acttctttttatttaaatttaaaatcgcaaattcaaaaactttaaaattaaagtatcttattgtt 43498480  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 315
Target Start/End: Original strand, 42136935 - 42137042
Alignment:
Q  207 cttgagtgttattaatctctaattgtgcaacaaagcttgttgtttgcataatcacaaaatataattataaaagactacaataaaacaagaagataactta 306  Q
    ||||| |||| || ||||||||||||  |||||| ||||| |||  |||| ||| ||| || ||  ||||| |||||||||| |||||||| ||||||||    
T  42136935 cttgaatgttgttcatctctaattgtaaaacaaaacttgtggttcacatagtcataaagta-aaacataaaggactacaatacaacaagaatataactta 42137033  T
Q  307 gaggctaac 315  Q
     ||||||||    
T  42137034 aaggctaac 42137042  T

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