View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13128_high_14 (Length: 285)
Name: NF13128_high_14
Description: NF13128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13128_high_14 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0741 (1 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 15200369 - 15200635
Alignment:
| Q |
9 |
gttctatagtaatggtttgtgttgcgccaaaagccaaggaggagcctatacctgaagggctgtcagttggaacccatgtagcttttgttgtttgaatctg |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||| |
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| T |
15200369 |
gttctagagtaatggtttgtgttgcgccaaaagccagggaggagcctatacctgaagggttgtcagttggaacccatgtagctttcgttgtttgtatcta |
15200468 |
T |
|
| Q |
109 |
cttcttcccaagcgctatttgttccttggcagctcttgtttcctttgttgtttcctttctagggtacaatcttctgcagacaatgacatcatgcccgata |
208 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15200469 |
cttcttcccaagcgctatttgttccttggcagc------------tgttgtttcctttctagggtacaatcttctgcagacaatgacatcatgcccgata |
15200556 |
T |
|
| Q |
209 |
t--tcttacagtgagaacagaaatcgagcatccatttgtaggccacaaaaatcgggaaagcatattcttctctctcgac |
285 |
Q |
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| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
15200557 |
tgatcttacagtgagaacagaaatcgggcatccatttgtaggccacaaaaattgggaaagcatatccttccctctcgac |
15200635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 15219521 - 15219617
Alignment:
| Q |
189 |
caatgacatcatgcccgatattcttacagtgagaacagaaatcgagcatccatttgtaggccacaaaaatcgggaaagcatattcttctctctcgac |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
15219521 |
caatgacatcatgcccgatattcttacagtgagaacagaaatcgggcatccatttgtaggccacaaaaatcgggaaagcatatccttccctctcgac |
15219617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 15219454 - 15219512
Alignment:
| Q |
9 |
gttctatagtaatggtttgtgttgcgccaaaagccaaggaggagcctatacctgaaggg |
67 |
Q |
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| T |
15219454 |
gttctagagtaatggtttgtgttgcgccaaaagccagggaggagcctatacctgaaggg |
15219512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 75 - 282
Target Start/End: Original strand, 27540016 - 27540223
Alignment:
| Q |
75 |
ttggaacccatgtagcttttgttgtttgaatctgcttcttcccaagcgctatttgttccttggcagctcttgtttcctttgttgtttcctttctagggta |
174 |
Q |
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|||||| ||||||| |||| |||| |||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||| || |||||||||| || |
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| T |
27540016 |
ttggaatccatgtatctttctttgtctgaacttgcttctttccaagcgctatttgttccttggcagctgttgttacctttgtgtttacctttctaggata |
27540115 |
T |
|
| Q |
175 |
caatcttctgcagacaatgacatcatgcccgatattcttacagtgagaacagaaatcgagcatccatttgtaggccacaaaaatcgggaaagcatattct |
274 |
Q |
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||||||||| ||||| |||| |||||||||||||||| |||||||||||| |||||| ||||||||| |||||||| | || ||||||||||||| || |
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| T |
27540116 |
caatcttctacagacggtgacgtcatgcccgatattctgacagtgagaacaaaaatcgggcatccattcataggccacgacaaccgggaaagcatatcct |
27540215 |
T |
|
| Q |
275 |
tctctctc |
282 |
Q |
| |
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|| ||||| |
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| T |
27540216 |
tccctctc |
27540223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 271
Target Start/End: Original strand, 20304877 - 20305041
Alignment:
| Q |
107 |
tgcttcttcccaagcgctatttgttccttggcagctcttgtttcctttgttgtttcctttctagggtacaatcttctgcagacaatgacatcatgcccga |
206 |
Q |
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||||| |||||| || ||||| ||| ||||||| | || | |||||||| |||||||||| || |||| ||||||||||||| |||| ||||| |||| |
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| T |
20304877 |
tgctttttcccatgccatattttttctttggcagttgttatgtcctttgtgatttcctttcttggatacagtcttctgcagacagtgacgtcatggccga |
20304976 |
T |
|
| Q |
207 |
tattcttacagtgagaacagaaatcgagcatccatttgtaggccacaaaaatcgggaaagcatat |
271 |
Q |
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|||||| ||||||||||||||| ||| ||||||||| |||||||| | || ||||||||||||| |
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| T |
20304977 |
tattctgacagtgagaacagaagtcgggcatccattcataggccacgacaaccgggaaagcatat |
20305041 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 7654275 - 7654048
Alignment:
| Q |
28 |
tgttgcgccaaaagccaaggaggagcctatacctgaagggctgtcagt---tggaacccatgtagcttttgttgtttgaatctgcttcttcccaagcgct |
124 |
Q |
| |
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||||||||||||||||| ||| ||| | || ||||||||| ||||||| ||||| ||||||| |||| |||| | || |||||||| ||||||||| |
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| T |
7654275 |
tgttgcgccaaaagccagggaagagtcgatccctgaagggttgtcagtccttggaatccatgtatctttctttgtctaaacttgcttctttccaagcgct |
7654176 |
T |
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| Q |
125 |
atttgttccttggcagctcttgtttcctttgttgtttcctttctagggtacaatcttctgcagacaatgacatcatgcccgatattcttacagtgagaac |
224 |
Q |
| |
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|||||||||||||||||| ||||| ||||||| || |||||||||| ||||||||||| || || ||| |||||||||||||||| ||||||| ||| |
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| T |
7654175 |
atttgttccttggcagctgttgttacctttgtgtttacctttctaggatacaatcttctacatacggtgatgtcatgcccgatattctgacagtgacaac |
7654076 |
T |
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| Q |
225 |
agaaatcgagcatccatttgtaggccac |
252 |
Q |
| |
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||||||| ||||||||| |||||||| |
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| T |
7654075 |
agaaatccggcatccattcataggccac |
7654048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0741 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0741
Description:
Target: scaffold0741; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 107 - 282
Target Start/End: Complemental strand, 5587 - 5412
Alignment:
| Q |
107 |
tgcttcttcccaagcgctatttgttccttggcagctcttgtttcctttgttgtttcctttctagggtacaatcttctgcagacaatgacatcatgcccga |
206 |
Q |
| |
|
||||| |||||| ||||||||| ||| ||||||||| || | |||||||| ||||||||||||| |||| ||||||||||||| |||| ||||| | || |
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| T |
5587 |
tgctttttcccatgcgctattttttctttggcagctgttatgtcctttgtgatttcctttctaggatacagtcttctgcagacagtgacgtcatggctga |
5488 |
T |
|
| Q |
207 |
tattcttacagtgagaacagaaatcgagcatccatttgtaggccacaaaaatcgggaaagcatattcttctctctc |
282 |
Q |
| |
|
|||||| ||||||||||||||| ||| ||||||||| |||||||| || ||||||||||||| |||| ||||| |
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| T |
5487 |
tattctgacagtgagaacagaagtcgggcatccattcataggccacggcaaccgggaaagcatatccttccctctc |
5412 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 276
Target Start/End: Complemental strand, 26176746 - 26176560
Alignment:
| Q |
90 |
cttttgttgtttgaatctgcttcttcccaagcgctatttgttccttggcagctcttgtttcctttgttgtttcctttctagggtacaatcttctgcagac |
189 |
Q |
| |
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||||||||| |||| ||||| |||||| |||||||| ||| ||||||||| || | |||||||| ||||||||||||| |||| |||||||||||| |
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| T |
26176746 |
cttttgttgcctgaacttgctttttcccatgcgctattatttctttggcagctgttatgtcctttgtgatttcctttctaggatacagtcttctgcagac |
26176647 |
T |
|
| Q |
190 |
aatgacatcatgcccgatattcttacagtgagaacagaaatcgagcatccatttgtaggccacaaaaatcgggaaagcatattcttc |
276 |
Q |
| |
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| |||| ||||| |||||||||| ||||||||||||||| ||| | ||||||| |||||||| | || ||||||||||||| |||| |
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|
| T |
26176646 |
agtgacgtcatggccgatattctgacagtgagaacagaagtcgggaatccattcataggccacgacaaccgggaaagcatatccttc |
26176560 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 252
Target Start/End: Original strand, 37635553 - 37635749
Alignment:
| Q |
59 |
cctgaagggctgtcagt---tggaacccatgtagcttttgttgtttgaatctgcttcttcccaagcgctatttgttccttggcagctcttgtttcctttg |
155 |
Q |
| |
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||||||||| ||||||| ||||| ||| ||| |||| |||| |||| ||||| |||||| ||| ||||| ||| |||||| || || | ||||||| |
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|
| T |
37635553 |
cctgaagggttgtcagtccttggaatccaagtatctttcgttgcctgaacttgctttttcccatgcgttattttttctttggcaactgttatgtcctttg |
37635652 |
T |
|
| Q |
156 |
ttgtttcctttctagggtacaatcttctgcagacaatgacatcatgcccgatattcttacagtgagaacagaaatcgagcatccatttgtaggccac |
252 |
Q |
| |
|
| ||||||||||||| |||| ||||||||||||| |||| ||||| |||||||||| ||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
37635653 |
tgatttcctttctaggatacagtcttctgcagacagtgacgtcatggccgatattctgacagtgagaacagaagtcgagcatccattcataggccac |
37635749 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 107 - 282
Target Start/End: Complemental strand, 41571 - 41396
Alignment:
| Q |
107 |
tgcttcttcccaagcgctatttgttccttggcagctcttgtttcctttgttgtttcctttctagggtacaatcttctgcagacaatgacatcatgcccga |
206 |
Q |
| |
|
||||| |||||| || |||||| ||| ||||||||| || | ||||| || ||||||||||||| |||| |||| |||||||| |||| ||||| ||| |
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|
| T |
41571 |
tgctttttcccatgcactattttttctttggcagctgttatgtccttcgtgatttcctttctaggatacagtcttttgcagacagtgacgtcatggacga |
41472 |
T |
|
| Q |
207 |
tattcttacagtgagaacagaaatcgagcatccatttgtaggccacaaaaatcgggaaagcatattcttctctctc |
282 |
Q |
| |
|
|||||| ||||||||| ||||| | | ||||||||| ||| |||| | || ||||||||||||| |||| ||||| |
|
|
| T |
41471 |
tattctgacagtgagagcagaagttgggcatccattcatagaccacgacaaccgggaaagcatatccttccctctc |
41396 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 16599893 - 16599978
Alignment:
| Q |
197 |
tcatgcccgatattcttacagtgagaacagaaatcgagcatccatttgtaggccacaaaaatcgggaaagcatattcttctctctc |
282 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||| ||||||||| |||||||| || ||||||||||||| |||| ||||| |
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|
| T |
16599893 |
tcatgcccgatattctgacagtgagaatagaaatccggcatccattcataggccacggcaaccgggaaagcatatccttccctctc |
16599978 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 29803881 - 29803844
Alignment:
| Q |
194 |
acatcatgcccgatattcttacagtgagaacagaaatc |
231 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
29803881 |
acatcatgccctatattctgacagtgagaacagaaatc |
29803844 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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