View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13128_high_2 (Length: 913)
Name: NF13128_high_2
Description: NF13128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13128_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 231 - 704
Target Start/End: Complemental strand, 42913492 - 42913016
Alignment:
| Q |
231 |
tgatcaccaacaatgatgcaaaaattgagaagaatgaagaagaggctccaattgagaagagtgaataaggagaaaatgtgtgaagtttatggaagtgttt |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42913492 |
tgatcaccaacaatgatgcaaaaattgagaagaatgaagaagaggctccaattgagaagagtgaataaggagaaaatgtgtgaagtttatggaagtgttt |
42913393 |
T |
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| Q |
331 |
aattagagagagtggttaattacattaatcactttaagttaagtttcattatgtcttgttg---aatgtcttcttcttgttacttgtttagtggtgtaat |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
42913392 |
aattagagagagtggttaattacattaatcactttaagttaagtttcactatgtcttgttgtttaatgtctttttcttgttacttgtttagtggtgtaat |
42913293 |
T |
|
| Q |
428 |
aaaatagctatagtacttactaccagtagctaaatgtatgggtgatgtgatgacccatttgaatttacctaatgtaaccttttcagtaatatgttccttt |
527 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42913292 |
aaaatagctatagtacttactactagtagctaaatgtatgggtgatgtgatgacccatttgaatttacctaatgtaaccttttcagtaatatgttccttt |
42913193 |
T |
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| Q |
528 |
gtatgattatgcattttggctttgtttg-tttgttataataaatatgtaagattgttgcaatatctttctttgagtaatgtcccttaatcacgtttactc |
626 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
42913192 |
gtatgattatgcattttggctttgtttgttttgttataataaacatgtaagattgttacaatatctttctttgagtaatgtcccttaatcacgtttacac |
42913093 |
T |
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| Q |
627 |
atacnnnnnnnnggtactaaaaagagtgcaaattatcaaatacaaatagttcacataaactcagctcaaatataaaag |
704 |
Q |
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| T |
42913092 |
gtac-tttttttggtactaaaaagagtgcaaattatcacatacaaatagttcacataaactcagctcaaatataaaag |
42913016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 42913703 - 42913575
Alignment:
| Q |
20 |
gaggaaacgaaagaaaacggtgattctgttgttgaggttgttcaagaaaaaccagctgaagaatctgagacagaacatgttgttaaggatgagaatgtgg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| | |||||||||||||||||||||||| |
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| T |
42913703 |
gaggaaacgaaagaaaacggtgattctgttgttgaggctgttcaggaaaaaccagctgaagagtctgagacagtaaatgttgttaaggatgagaatgtgg |
42913604 |
T |
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| Q |
120 |
tagctgagcctgaaactaaggacaatgtt |
148 |
Q |
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| T |
42913603 |
tagctgagcctgaaactaaggacaatgtt |
42913575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 728 - 788
Target Start/End: Complemental strand, 42912059 - 42911998
Alignment:
| Q |
728 |
ttcaattatgatcgagctttcaatttaaacataaataat-aaacgtgaagccaaatgaaacc |
788 |
Q |
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| T |
42912059 |
ttcaattatgatcgagctttcaatttaaacataaataataaaacgtgaaaccaaatgaaacc |
42911998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 786 - 851
Target Start/End: Complemental strand, 42911968 - 42911899
Alignment:
| Q |
786 |
accacgtggggtatgttcca----aaaggaaaatagcaacaagcgattgtcaaagtcttctacacattaa |
851 |
Q |
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|||||||||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||||||| |
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| T |
42911968 |
accacgtggggtatgttccagctaaaaggaaaattgcaacaaacaattgtcaaagtcttctacacattaa |
42911899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 803 - 892
Target Start/End: Original strand, 15289926 - 15290014
Alignment:
| Q |
803 |
ccaaaaggaaaatagcaacaagcgattgtcaaagtcttctacacattaaatgcatgatttagttttttcctttcaaataatttggctatg |
892 |
Q |
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| T |
15289926 |
ccaaaaggaaaattgcaacaagcaattgtcaaagtcttctacacattaaatgcatggcttag-tttttcctttcaaatagtttggctatg |
15290014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 803 - 892
Target Start/End: Original strand, 15302633 - 15302721
Alignment:
| Q |
803 |
ccaaaaggaaaatagcaacaagcgattgtcaaagtcttctacacattaaatgcatgatttagttttttcctttcaaataatttggctatg |
892 |
Q |
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| T |
15302633 |
ccaaaaggaaaatcgcaacaagcaattgtcaaagtcttctacacattaaatgcatggcttag-attttcctttcaaatagtttggctatg |
15302721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 786 - 892
Target Start/End: Original strand, 14173605 - 14173714
Alignment:
| Q |
786 |
accacgtggggtatgttcca----aaaggaaaatagcaacaagcgattgtcaaagtcttctacacattaaatgcatgatttagttttttcctttcaaata |
881 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
14173605 |
accacgtggggtatgttccagccaaaaggaaaattgcaacaagcaattgtcaaattcttctacacattaaatgcatggcttag-tttttcctttcaaata |
14173703 |
T |
|
| Q |
882 |
atttggctatg |
892 |
Q |
| |
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|||||||||| |
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| T |
14173704 |
gtttggctatg |
14173714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 786 - 892
Target Start/End: Original strand, 14178359 - 14178468
Alignment:
| Q |
786 |
accacgtggggtatgttcca----aaaggaaaatagcaacaagcgattgtcaaagtcttctacacattaaatgcatgatttagttttttcctttcaaata |
881 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
14178359 |
accacgtggggtatgttccagccaaaaggaaaattgcaacaagcaattgtcaaattcttctacacattaaatgcatggcttag-tttttcctttcaaata |
14178457 |
T |
|
| Q |
882 |
atttggctatg |
892 |
Q |
| |
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|||||||||| |
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| T |
14178458 |
gtttggctatg |
14178468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 786 - 892
Target Start/End: Original strand, 44161255 - 44161364
Alignment:
| Q |
786 |
accacgtggggtatgttcca----aaaggaaaatagcaacaagcgattgtcaaagtcttctacacattaaatgcatgatttagttttttcctttcaaata |
881 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
44161255 |
accacgtggggtatgttccagccaaaaggaaaattgcaacaagcaattgtcaaattcttctacacattaaatgcatggcttag-tttttcctttcaaata |
44161353 |
T |
|
| Q |
882 |
atttggctatg |
892 |
Q |
| |
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|||||||||| |
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| T |
44161354 |
gtttggctatg |
44161364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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