View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13128_high_5 (Length: 504)
Name: NF13128_high_5
Description: NF13128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13128_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 487
Target Start/End: Original strand, 41469524 - 41470000
Alignment:
| Q |
20 |
aaagtaaattgttatatatataattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
41469524 |
aaagtaaattgttatatatataattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatcctttcggtgt |
41469623 |
T |
|
| Q |
120 |
agcttacattctgttgcattttttaatgannnnnnnnnn---------gtagtttatgtgatttcttacttttttatatttcatggtagctaaatctgtt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
41469624 |
agcttacattctgttgcattttttaatgatttttttttttttttttttgtagtttatgtgatttcttacttttttatatttcatggtagttaaatctgtt |
41469723 |
T |
|
| Q |
211 |
tcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaagccattcttcaactagaa |
310 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41469724 |
tcacattgttcccttagaaatcagcaaggtacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaagccattcttcaactagaa |
41469823 |
T |
|
| Q |
311 |
gctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagacgggccatg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41469824 |
gctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagacgggccatg |
41469923 |
T |
|
| Q |
411 |
taatttcttttagctcttcggatttatggtagcaatgctaaatgagtaattatctctttttaacgctctcttgaaca |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
41469924 |
taatttcttttagctcttcggatttatggtagcaatgctaaatgagtaattatctctttttaatgctctcttgaaca |
41470000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 40 - 487
Target Start/End: Original strand, 41476568 - 41477012
Alignment:
| Q |
40 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgtagctta-cattctgttgcat |
138 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||||||| | |||||||||||||||||||| ||||| | || | | ||| ||||||| ||||||| ||||| |
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|
| T |
41476568 |
taattaatattggtattctgtttcatggatttagagccaaaacattctggtttttattaatatatctttcttctcggtatagcttaacattctgctgcat |
41476667 |
T |
|
| Q |
139 |
tttttaatgannnnnnnnnngtagtttatgtgatttcttacttttttatatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaag |
238 |
Q |
| |
|
||| ||||| ||||| || |||||| ||| ||||| |||||| |||||||| | |||||||| ||||||||| ||||||||||||||| |
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|
| T |
41476668 |
tttggaatgatttgtt----gtagtcgatttgattttttaatttttgatattttgtggtagctgagtctgtttcacattgttccattagaaatcagcaag |
41476763 |
T |
|
| Q |
239 |
atacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtg |
338 |
Q |
| |
|
|| | |||||||||||| || |||| ||||| | ||||||||| |||||| ||| | | |||| ||| ||||||||||||| |||| ||| |||| |
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|
| T |
41476764 |
atgcggcaggttgaacgtgagtatcaggagaaagtatcgaaggatcatgaaatagctaggcaggaactggaaactcggaggaatgaacttaagtcccgtg |
41476863 |
T |
|
| Q |
339 |
aaaaggatctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatg |
438 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| || |||||||| |||| |||| || ||| | ||||||| | |||| |||||| | |||||| |
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|
| T |
41476864 |
aaaaggatctgcagaagcgtcaagcagataatctcaatgagagaaacaagctatatcttgagaagaaaaatgtaatgtattttggctctttgagtttatg |
41476963 |
T |
|
| Q |
439 |
gtagcaatgctaaatgagtaattatctctttttaacgctctcttgaaca |
487 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||| |||||||||||| |
|
|
| T |
41476964 |
gtagcaatgctaaatgaataattctctccttttaaccctctcttgaaca |
41477012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 186 - 473
Target Start/End: Original strand, 40750960 - 40751247
Alignment:
| Q |
186 |
atatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaaggatta |
285 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||| | ||||||||||||||||| | |||||||||| |||| |||| ||||| | || |||||| | |
|
|
| T |
40750960 |
atatttcatggtagctgagtctgtttcatattgtttcattagaaatcagcaagatgcggcaggttgaatgcgagtatcaggagaaagtatctaaggatca |
40751059 |
T |
|
| Q |
286 |
tgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaat |
385 |
Q |
| |
|
||||||| ||| || |||| ||||||||||||||||| |||||||| ||||| |||||||| |||||| |||||| ||||||| ||| ||||||| |
|
|
| T |
40751060 |
tgaaaaatccaggctggaactggaagctcggaggaatgaacttatgtcccgtgagaaggatctacagaagcgtcaagcagataatcacaatgagagaacc |
40751159 |
T |
|
| Q |
386 |
aagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatggtagcaatgctaaatgagtaattatctctttttaa |
473 |
Q |
| |
|
|||| ||||||| ||| | |||||||| | |||| |||||| | ||||||||||||||||||| |||| ||||| |||| |||||| |
|
|
| T |
40751160 |
aagctatattttgagaagaaacatgtaatgtattttggctctttgaatttatggtagcaatgctagatgaataattctctccttttaa |
40751247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 40 - 487
Target Start/End: Original strand, 41483622 - 41484055
Alignment:
| Q |
40 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgtagcttacattctgttgcatt |
139 |
Q |
| |
|
||||| |||||||| ||| ||||| |||||||||||| |||||||||||||||||| || |||||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
41483622 |
taattaatattggtgttctgtttctttgatttagaggtgaaacattctggtttttactactatatatatcattttggtgtagcttacagtctgttacatt |
41483721 |
T |
|
| Q |
140 |
ttttaatgannnnnnnnnngtagtttatgtgatttcttacttttttatatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaaga |
239 |
Q |
| |
|
|| ||||| |||||| || |||| ||||| |||||||||||||||| | ||||||| ||||| | ||||| |||||||||| |
|
|
| T |
41483722 |
ttggaatga-------tttgtagttgatttgat-------tttttaatatttcatggtagcttagtctgttttattttgtttcattagagatcagcaaga |
41483807 |
T |
|
| Q |
240 |
tacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtga |
339 |
Q |
| |
|
| | |||||||||||| || || | ||||| | || |||||| |||||||||||| || |||| |||||||||||||| |||||||| || ||||| |
|
|
| T |
41483808 |
tgcggcaggttgaacgagagtaccaggagaaagtatctaaggatcatgaaaaagccaggctggaactggaagctcggaggaacgagcttatttcccgtga |
41483907 |
T |
|
| Q |
340 |
aaaggatctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatgg |
439 |
Q |
| |
|
||||||||||||||| || ||| ||||||| ||| |||| | |||| ||||||| ||| | |||||||| | ||| |||||| ||||||| |
|
|
| T |
41483908 |
gaaggatctgcagaagcgtgaagtagataatcacaatgagaaagccaagctatattttgagaagcaacatgtaatgtatttcggctcttttaatttatga |
41484007 |
T |
|
| Q |
440 |
tagcaatgctaaatgagtaattatctctttttaacgctctcttgaaca |
487 |
Q |
| |
|
|||||||||||||||| | ||| |||| ||||||| ||||| |||||| |
|
|
| T |
41484008 |
tagcaatgctaaatgaattattctctccttttaaccctctcatgaaca |
41484055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 40750828 - 40750929
Alignment:
| Q |
40 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgtagcttacattctgttgcatt |
139 |
Q |
| |
|
||||| |||| |||||||||| |||| |||||||||| |||||| | | ||||||| || || | |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
40750828 |
taattaatatcggtattccgtctcatcgatttagaggtgaaacactatcgtttttactactacacctatcattttggtgtagcttacattctattgcatt |
40750927 |
T |
|
| Q |
140 |
tt |
141 |
Q |
| |
|
|| |
|
|
| T |
40750928 |
tt |
40750929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 180 - 468
Target Start/End: Complemental strand, 16413508 - 16413221
Alignment:
| Q |
180 |
ttttttatatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaa |
279 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
16413508 |
ttttttatatttcatggtagctaagtctgtttcacattgttccgttagaaatcagcaagatgcggcaggttgaacgcgattatcttgagagcataacgaa |
16413409 |
T |
|
| Q |
280 |
ggattatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgag |
379 |
Q |
| |
|
|||| | ||||||||||| || |||| ||||| | ||||||||| ||||||| ||| |||||||||||||||||| | |||||||||||| |||| | | |
|
|
| T |
16413408 |
ggatcaagaaaaagccatactggaactggaagcgctgaggaatgaacttatgttacgagaaaaggatctgcagaagcgacaagaagataatcacattgtg |
16413309 |
T |
|
| Q |
380 |
agaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatggtagcaatgctaaatgagtaattatctctt |
468 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||| ||||||||||| | ||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
16413308 |
agaaataagctatattttcaaacaaaacatgtaatttattttagctctttgaatttatggtagcaatgctaaa-gagtaattctctctt |
16413221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 186 - 394
Target Start/End: Complemental strand, 16409078 - 16408870
Alignment:
| Q |
186 |
atatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaaggatta |
285 |
Q |
| |
|
||||||||||||| || |||||||| |||||||| ||||||||||||||||| | ||||||||||||||| |||| ||||| || || |||||| | |
|
|
| T |
16409078 |
atatttcatggtaactgtgtctgtttcatattgttccattagaaatcagcaagatgcggcaggttgaacgcgagtatcaggagaaaatatccaaggatca |
16408979 |
T |
|
| Q |
286 |
tgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaat |
385 |
Q |
| |
|
||||||||||| || ||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||| ||||||||| |
|
|
| T |
16408978 |
tgaaaaagccaggctggaactagaagcttggaaaaatgagcttatgtcccgtgaaaaggatctgcagaagcgtcaagcagataatcacaatgagagaaat |
16408879 |
T |
|
| Q |
386 |
aagcaatat |
394 |
Q |
| |
|
|||| |||| |
|
|
| T |
16408878 |
aagctatat |
16408870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 194 - 446
Target Start/End: Original strand, 52471849 - 52472101
Alignment:
| Q |
194 |
tggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaag |
293 |
Q |
| |
|
|||||||| | | |||||| ||||||||| ||||||||||||||||| | ||| ||||||||| | |||||||| | ||||| |||||| ||||||||| |
|
|
| T |
52471849 |
tggtagcttagtttgtttcacattgttccattagaaatcagcaagatgcggcaagttgaacgcaactatctggaaaatatgtctaaggatcatgaaaaag |
52471948 |
T |
|
| Q |
294 |
ccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaataagcaata |
393 |
Q |
| |
|
|||| | |||| |||||| |||||||||| |||||||| ||||||| ||||||||||||| |||||| ||||||| ||| ||||| ||||||| ||| |
|
|
| T |
52471949 |
ccatgttggaactggaagctaggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaataagctata |
52472048 |
T |
|
| Q |
394 |
ttttcagacgggccatgtaatttcttttagctcttcggatttatggtagcaat |
446 |
Q |
| |
|
| || ||| | || ||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
52472049 |
tcttgagaggaaacaggtaatttattttggctcttcgattttatggtagcaat |
52472101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 16409183 - 16409115
Alignment:
| Q |
46 |
atattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatcctttt |
114 |
Q |
| |
|
||||| |||||| ||||| |||||||||||| |||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
16409183 |
atatttgtattctgtttctttgatttagaggtgaaacattcttgtttttattgttatatgtatcctttt |
16409115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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