View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13128_high_6 (Length: 461)

Name: NF13128_high_6
Description: NF13128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13128_high_6
NF13128_high_6
[»] chr1 (13 HSPs)
chr1 (12-398)||(34591698-34592084)
chr1 (366-429)||(48548975-48549038)
chr1 (376-443)||(7524160-7524227)
chr1 (366-421)||(35961437-35961492)
chr1 (388-432)||(39673965-39674009)
chr1 (396-443)||(1514390-1514437)
chr1 (366-421)||(5268288-5268343)
chr1 (366-421)||(34915135-34915190)
chr1 (362-429)||(44786875-44786942)
chr1 (370-424)||(213246-213300)
chr1 (384-429)||(37733613-37733658)
chr1 (407-443)||(7790644-7790680)
chr1 (381-429)||(7930983-7931031)
[»] chr7 (9 HSPs)
chr7 (366-444)||(40561719-40561797)
chr7 (376-421)||(32295253-32295298)
chr7 (366-443)||(45557412-45557489)
chr7 (366-441)||(40491627-40491702)
chr7 (366-429)||(45005081-45005144)
chr7 (366-416)||(26975317-26975367)
chr7 (366-444)||(44570701-44570779)
chr7 (398-443)||(38123659-38123704)
chr7 (370-423)||(41788383-41788436)
[»] chr6 (10 HSPs)
chr6 (366-443)||(34620933-34621010)
chr6 (366-443)||(34748370-34748447)
chr6 (366-429)||(32888918-32888981)
chr6 (369-429)||(2493975-2494035)
chr6 (366-443)||(882733-882810)
chr6 (366-443)||(1485107-1485184)
chr6 (378-429)||(4910969-4911020)
chr6 (367-417)||(1499973-1500023)
chr6 (399-443)||(852579-852623)
chr6 (366-414)||(25208702-25208750)
[»] scaffold0361 (1 HSPs)
scaffold0361 (366-443)||(14075-14152)
[»] chr8 (14 HSPs)
chr8 (374-429)||(14382457-14382512)
chr8 (366-443)||(16972025-16972102)
chr8 (366-443)||(32927939-32928016)
chr8 (366-444)||(4950529-4950607)
chr8 (386-424)||(10553153-10553191)
chr8 (362-443)||(26100103-26100184)
chr8 (366-426)||(8700900-8700960)
chr8 (362-422)||(28805243-28805303)
chr8 (378-443)||(2924824-2924889)
chr8 (366-427)||(11502166-11502227)
chr8 (396-429)||(32101134-32101167)
chr8 (395-444)||(32736508-32736557)
chr8 (372-429)||(37641611-37641668)
chr8 (366-426)||(2778577-2778637)
[»] chr2 (16 HSPs)
chr2 (366-429)||(15220822-15220885)
chr2 (366-443)||(44439301-44439378)
chr2 (366-442)||(1976825-1976901)
chr2 (395-430)||(38074469-38074504)
chr2 (396-429)||(9605247-9605280)
chr2 (368-443)||(33502284-33502356)
chr2 (363-426)||(37519904-37519967)
chr2 (378-444)||(22536044-22536110)
chr2 (362-428)||(40401600-40401666)
chr2 (377-443)||(42741024-42741089)
chr2 (366-447)||(680251-680332)
chr2 (366-439)||(4383022-4383095)
chr2 (368-429)||(4894120-4894181)
chr2 (378-427)||(11504035-11504084)
chr2 (407-443)||(32307131-32307167)
chr2 (407-443)||(32798510-32798546)
[»] chr4 (10 HSPs)
chr4 (368-429)||(25319109-25319170)
chr4 (369-429)||(27096562-27096622)
chr4 (360-427)||(17898083-17898150)
chr4 (366-429)||(22683925-22683988)
chr4 (402-443)||(32100339-32100380)
chr4 (362-429)||(28178802-28178869)
chr4 (366-429)||(33843772-33843835)
chr4 (398-443)||(4243434-4243479)
chr4 (396-440)||(10185244-10185288)
chr4 (381-429)||(55927746-55927794)
[»] chr5 (7 HSPs)
chr5 (366-426)||(117457-117517)
chr5 (388-429)||(37886021-37886062)
chr5 (369-429)||(34443036-34443096)
chr5 (404-443)||(10898768-10898807)
chr5 (400-441)||(8506701-8506742)
chr5 (377-429)||(9184987-9185039)
chr5 (366-442)||(35138984-35139060)
[»] chr3 (10 HSPs)
chr3 (368-443)||(46853497-46853572)
chr3 (366-444)||(3776568-3776646)
chr3 (395-444)||(37703145-37703194)
chr3 (376-444)||(27266765-27266833)
chr3 (366-429)||(35264372-35264435)
chr3 (366-425)||(37334995-37335054)
chr3 (388-443)||(53906672-53906727)
chr3 (392-442)||(30300985-30301035)
chr3 (398-443)||(4526179-4526224)
chr3 (362-427)||(27499319-27499384)


Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 398
Target Start/End: Complemental strand, 34592084 - 34591698
Alignment:
Q  12 agtgagatgaatgagttgcttcattttctctacattcatactagaaagttgcactcatatatgaatgtacactacagttaagattaatatatgtatagta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34592084 agtgagatgaatgagttgcttcattttctctacattcatactagaaagttgcactcatatatgaatgtacactacagttaagattaatatatgtatagta 34591985  T
Q  112 acgagaaaaaagtaagagtggtggtaactagtaagatagtaaaaatgtcacaagttaaaacagtgttttttccttgacagagtgatgacattacaagtta 211  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34591984 acgagaaaaaagtaagtgtggtggtaactagtaagatagtaaaaaggtcacaagttaaaacagtgttttttccttgacagagtgatgacattaaaagtta 34591885  T
Q  212 aaatgtagttctgcacgaggattaattaattttaaaagtgttgaatttattatgatattgacatgtttatgcgtacgtgcatgtctgtttgtttcagcaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |    
T  34591884 aaatgtagttctgcacgaggattaattaattttaaaagtgttgaatttattatgatattgacatgcttatgcgtacgtgcatgtctgtttggttcagcga 34591785  T
Q  312 tgataaaaactgattttgcgaaattgatttgtaaaatttatatatggttgaaaatgagttgaaagtaaagtgattcatgtttcaata 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34591784 tgataaaaactgattttgcgaaattgatttgtaaaatttatatatggttgaaaatgagttgaaagtaaagtgattcatgtttcaata 34591698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 429
Target Start/End: Original strand, 48548975 - 48549038
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||||| ||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  48548975 tgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgagttgaacaataaat 48549038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 7524227 - 7524160
Alignment:
Q  376 gtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    |||||||||||  |||||  | ||||||||||||||||||||||||| |||||| || ||||||||||    
T  7524227 gtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaat 7524160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 421
Target Start/End: Complemental strand, 35961492 - 35961437
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaa 421  Q
    ||||||||| ||||| ||||| ||||||| ||||||| ||||||||||||||||||    
T  35961492 tgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaa 35961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 432
Target Start/End: Complemental strand, 39674009 - 39673965
Alignment:
Q  388 atgtttcaatacatttatgtaaaagtgagttgaacaataaatatg 432  Q
    |||||| |||| | |||||||||||||||||||||||||||||||    
T  39674009 atgtttgaatatacttatgtaaaagtgagttgaacaataaatatg 39673965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 1514437 - 1514390
Alignment:
Q  396 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||| |||||||| ||||||||||||||||| || ||||||||||    
T  1514437 atacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaat 1514390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 421
Target Start/End: Complemental strand, 5268343 - 5268288
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaa 421  Q
    ||||||||| |||||||||||  ||||| |||| ||| ||||||||||||||||||    
T  5268343 tgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgagttgaa 5268288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 421
Target Start/End: Complemental strand, 34915190 - 34915135
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaa 421  Q
    ||||||| | ||||| ||||| |||||| |||||||| ||||||||||||||||||    
T  34915190 tgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaa 34915135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 429
Target Start/End: Original strand, 44786875 - 44786942
Alignment:
Q  362 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||||||||| ||||| ||||| |||||  |||||||| |||||||||||| || ||||| ||||    
T  44786875 aaaatgagttgaatgtaaaatgatttatgttcgaatacattcatgtaaaagtgaattcaacaacaaat 44786942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 424
Target Start/End: Original strand, 213246 - 213300
Alignment:
Q  370 ttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaa 424  Q
    ||||| ||||||||||| ||||||  ||||||  |||||||||||||||||||||    
T  213246 ttgaatgtaaagtgatttatgtttggatacatgcatgtaaaagtgagttgaacaa 213300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 37733613 - 37733658
Alignment:
Q  384 attcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    |||||||||| |||||||||||||| || ||||||||| |||||||    
T  37733613 attcatgtttgaatacatttatgtataaatgagttgaataataaat 37733658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 443
Target Start/End: Original strand, 7790644 - 7790680
Alignment:
Q  407 taaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||||||||||||||||||| || ||||||||||    
T  7790644 taaaagtgagttgaacaataaatttgtgtgtaaaaat 7790680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 7930983 - 7931031
Alignment:
Q  381 gtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    |||||| ||| || |||||||||| || |||||||||||||||||||||    
T  7930983 gtgatttatgattgaatacatttacgtgaaagtgagttgaacaataaat 7931031  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 366 - 444
Target Start/End: Original strand, 40561719 - 40561797
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatt 444  Q
    ||||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||||||| || || ||||| |||||    
T  40561719 tgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaatatatttgagtgtataaatt 40561797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 32295298 - 32295253
Alignment:
Q  376 gtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaa 421  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||    
T  32295298 gtaaagtgatttgtgttttaatacatttatgtaaaagtgagttgaa 32295253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 45557489 - 45557412
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||||| |||||||||||  |||||  ||||||| ||||||||||||||||| | | |||| || ||||||||||    
T  45557489 tgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaat 45557412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 40491702 - 40491627
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaa 441  Q
    ||||||||| ||||||||||| || |||  ||||||| ||||||||||||||| |||  ||||| || ||||||||    
T  40491702 tgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaa 40491627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 429
Target Start/End: Complemental strand, 45005144 - 45005081
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||||| |||||  |||| ||||||  ||| |||||||||||||||||||||| |||||||    
T  45005144 tgagttgaaggtaaaccgattgatgttttgatatatttatgtaaaagtgagttgaataataaat 45005081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 416
Target Start/End: Original strand, 26975317 - 26975367
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgag 416  Q
    ||||||||| ||||| ||||| |||||| ||||| ||||||||||||||||    
T  26975317 tgagttgaatgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 26975367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 444
Target Start/End: Original strand, 44570701 - 44570779
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatt 444  Q
    ||||||||| ||||||||||| |||||| | || ||| || ||||||||||||||  ||||||| ||  ||||||||||    
T  44570701 tgagttgaatgtaaagtgatttatgtttgattatattcatataaaagtgagttgataaataaatttgaatgtaaaaatt 44570779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 38123659 - 38123704
Alignment:
Q  398 acatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||| ||||||||||||||||| |||||||| || ||||||||||    
T  38123659 acattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaat 38123704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 41788436 - 41788383
Alignment:
Q  370 ttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaaca 423  Q
    ||||| ||||||||||| ||||||  ||||||| || |||||||||||||||||    
T  41788436 ttgaaggtaaagtgatttatgtttgtatacattaatataaaagtgagttgaaca 41788383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 34621010 - 34620933
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||||| ||||||||||| ||||||  |||||||||||||||||||||||||| ||||||| |  ||||||||||    
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaat 34620933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 34748447 - 34748370
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||||| ||||||||||| ||||||  |||||||||||||||||||||||||| ||||||| |  ||||||||||    
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaat 34748370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 429
Target Start/End: Original strand, 32888918 - 32888981
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    |||||||||  |||| ||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  32888918 tgagttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgagttgaacaataaat 32888981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 2493975 - 2494035
Alignment:
Q  369 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    |||||| |||| |||||| |||||| |||| ||||||||||||||| ||||||||||||||    
T  2493975 gttgaatgtaaggtgatttatgtttgaatatatttatgtaaaagtgtgttgaacaataaat 2494035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 882810 - 882733
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||||| ||||| ||||| ||||||  ||||||| ||| ||||||||||| |||||||||| ||  |||||||||    
T  882810 tgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttgaatgtaaaaat 882733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 1485107 - 1485184
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    |||||| |||||  ||||||| | ||||  ||||| |||||||||||||||||||||||||||| || |||| |||||    
T  1485107 tgagtttaaagttgagtgatttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaat 1485184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 429
Target Start/End: Complemental strand, 4911020 - 4910969
Alignment:
Q  378 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||||| ||||||  |||||||||||||||||||||| |||| ||||||    
T  4911020 aaagtgatttatgtttggatacatttatgtaaaagtgagtcgaactataaat 4910969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 417
Target Start/End: Complemental strand, 1500023 - 1499973
Alignment:
Q  367 gagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagt 417  Q
    |||||||  ||||| ||||| |||||| |||||||||||||||||||||||    
T  1500023 gagttgagtgtaaattgatttatgtttgaatacatttatgtaaaagtgagt 1499973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 852623 - 852579
Alignment:
Q  399 catttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    |||| ||||||||||||||| ||||||| || |||||||||||||    
T  852623 cattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaat 852579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 414
Target Start/End: Complemental strand, 25208750 - 25208702
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtg 414  Q
    ||||||||| ||||| ||||| ||||||| ||| |||||||||||||||    
T  25208750 tgagttgaatgtaaaatgatttatgtttcgatagatttatgtaaaagtg 25208702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 14075 - 14152
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||||| ||||||||||| ||||||  ||||||| |||| ||||||||||||| ||||||| || ||||||||||    
T  14075 tgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaat 14152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 429
Target Start/End: Complemental strand, 14382512 - 14382457
Alignment:
Q  374 aagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||| |||| |||||||| |||| |||||||||||||||||||||||||||||    
T  14382512 aagtaaactgatacatgtttcgatacttttatgtaaaagtgagttgaacaataaat 14382457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 16972025 - 16972102
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||||| ||||| |||||  ||||| |||||||| |||||||||||| ||||||||||||| || || |||||||    
T  16972025 tgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaat 16972102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 32928016 - 32927939
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||||| | |||||||||  |||||  ||||||| ||||||||||||||||||| |||||| || ||||||||||    
T  32928016 tgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaat 32927939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 444
Target Start/End: Complemental strand, 4950607 - 4950529
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatt 444  Q
    ||||||||| ||||||||||| ||||||  ||| |||||||  ||||||||||||| ||||||| |  |||||||||||    
T  4950607 tgagttgaaggtaaagtgatttatgtttggatatatttatgagaaagtgagttgaaaaataaatttaagtgtaaaaatt 4950529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 424
Target Start/End: Original strand, 10553153 - 10553191
Alignment:
Q  386 tcatgtttcaatacatttatgtaaaagtgagttgaacaa 424  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  10553153 tcatgtttaaatacatttatgtaaaagtgagttgaacaa 10553191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 443
Target Start/End: Original strand, 26100103 - 26100184
Alignment:
Q  362 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    |||| |||||||| ||||||  |||  |||||  || |||||||||||||||||||||||| |||||| || ||||||||||    
T  26100103 aaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaat 26100184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 426
Target Start/End: Complemental strand, 8700960 - 8700900
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaata 426  Q
    ||||||||| ||||||| ||| |||||| |||| |||  ||||||||||||||||||||||    
T  8700960 tgagttgaaggtaaagtaatttatgtttaaataaattcttgtaaaagtgagttgaacaata 8700900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 422
Target Start/End: Complemental strand, 28805303 - 28805243
Alignment:
Q  362 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaac 422  Q
    ||||||| ||||||||||| ||||| |||||| |||||||| || ||||||| ||||||||    
T  28805303 aaaatgatttgaaagtaaaatgatttatgtttgaatacattaatataaaagtaagttgaac 28805243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 443
Target Start/End: Complemental strand, 2924889 - 2924824
Alignment:
Q  378 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||| | ||||||  |||||| |||||||||||||||||| ||||| || || ||||||||||    
T  2924889 aaagtgagttatgtttggatacatatatgtaaaagtgagttgatcaatatatttgagtgtaaaaat 2924824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 11502166 - 11502227
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataa 427  Q
    |||||| |||||||| ||||| || ||| |||| ||||| ||||||||||||| ||||||||    
T  11502166 tgagtttaaagtaaaatgatttattttttaatatatttaagtaaaagtgagttaaacaataa 11502227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 429
Target Start/End: Complemental strand, 32101167 - 32101134
Alignment:
Q  396 atacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||||||||||||||||||||||| ||||||    
T  32101167 atacatttatgtaaaagtgagttgaactataaat 32101134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 32736557 - 32736508
Alignment:
Q  395 aatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatt 444  Q
    |||||||| |||||||||||| |||||| |||||| || |||||||||||    
T  32736557 aatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaatt 32736508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 429
Target Start/End: Complemental strand, 37641668 - 37641611
Alignment:
Q  372 gaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||||||||| | ||||||  ||| |||||  |||||||||||||||||||||||    
T  37641668 gaaagtaaagtgacttatgtttggataaatttacctaaaagtgagttgaacaataaat 37641611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 426
Target Start/End: Complemental strand, 2778637 - 2778577
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaata 426  Q
    |||||||||  |||||||||| || |||  ||| ||||||| |||||||||||||||||||    
T  2778637 tgagttgaagataaagtgatttatttttggataaatttatgcaaaagtgagttgaacaata 2778577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 429
Target Start/End: Original strand, 15220822 - 15220885
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||||| ||||||||||| ||||||  ||||||| |||| |||||||||||||||||||||    
T  15220822 tgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaacaataaat 15220885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 44439378 - 44439301
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    |||||| || ||||||||||| ||||||  |||  ||||||||||||||||||||||||||||| || |||| |||||    
T  44439378 tgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaat 44439301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 1976825 - 1976901
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaa 442  Q
    ||||||||| |||||| || | ||||||  ||||||| ||||||||||||||| |||||||||| || |||||||||    
T  1976825 tgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaatttgagtgtaaaaa 1976901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 430
Target Start/End: Complemental strand, 38074504 - 38074469
Alignment:
Q  395 aatacatttatgtaaaagtgagttgaacaataaata 430  Q
    ||||||||||||||||||||||||||||||||||||    
T  38074504 aatacatttatgtaaaagtgagttgaacaataaata 38074469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 429
Target Start/End: Complemental strand, 9605280 - 9605247
Alignment:
Q  396 atacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||||||||||||||||||||||||||||||    
T  9605280 atacatttatgtaaaagtgagttgaacaataaat 9605247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 443
Target Start/End: Complemental strand, 33502356 - 33502284
Alignment:
Q  368 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||| |||||||||||  |||||  |||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  33502356 agttgaatgtaaagtgatttgtgtttggatacatt---gtaaaagtgagttgaactataaatatgtgtgtaaaaat 33502284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 37519967 - 37519904
Alignment:
Q  363 aaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaata 426  Q
    |||||| |||||||||||||| || |  ||| ||||||||||| |||||| |||||||||||||    
T  37519967 aaatgatttgaaagtaaagtggtttacatttgaatacatttatttaaaagcgagttgaacaata 37519904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 444
Target Start/End: Complemental strand, 22536110 - 22536044
Alignment:
Q  378 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatt 444  Q
    |||||||||  |||||  |||||||||||||||| |||||| ||| ||||||||| ||| |||||||    
T  22536110 aaagtgatttgtgtttggatacatttatgtaaaaatgagtttaactataaatatgtgtgcaaaaatt 22536044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 428
Target Start/End: Original strand, 40401600 - 40401666
Alignment:
Q  362 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaa 428  Q
    ||||||||||||| ||| | | ||| ||||||  ||||||| |||||||||| ||||||||||||||    
T  40401600 aaaatgagttgaaggtagactaatttatgtttggatacattcatgtaaaagtcagttgaacaataaa 40401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 42741089 - 42741024
Alignment:
Q  377 taaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||||||  ||||| |||||||| |||||||||||||||| ||| ||||| || ||||||||||    
T  42741089 taaagtgatttgtgtttgaatacatt-atgtaaaagtgagttggacagtaaatttgagtgtaaaaat 42741024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 447
Target Start/End: Original strand, 680251 - 680332
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaattgat 447  Q
    ||||||||| |||||||| ||  |||||  ||||||| ||||||||||||||||||   ||||| |  ||||||||||||||    
T  680251 tgagttgaaggtaaagtgttttgtgtttgcatacattcatgtaaaagtgagttgaattctaaattttagtgtaaaaattgat 680332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 4383095 - 4383022
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaa 439  Q
    |||||||||||||| ||| || ||| ||| ||| ||||||||||| ||| ||||||| |||||| | |||||||    
T  4383095 tgagttgaaagtaatgtggtttatgattctatatatttatgtaaatgtgggttgaactataaattttggtgtaa 4383022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 4894120 - 4894181
Alignment:
Q  368 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||| ||||||||||| ||||||  ||||||| || ||||||||| ||||| |||||||    
T  4894120 agttgaaggtaaagtgatttatgtttagatacattcatttaaaagtgacttgaataataaat 4894181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 11504035 - 11504084
Alignment:
Q  378 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataa 427  Q
    |||||||||  ||||| |||||||| ||||||||||||||||||| ||||    
T  11504035 aaagtgatttgtgttttaatacattcatgtaaaagtgagttgaactataa 11504084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 32307167 - 32307131
Alignment:
Q  407 taaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    |||||||||||||||||||||||||  ||||||||||    
T  32307167 taaaagtgagttgaacaataaatataagtgtaaaaat 32307131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 443
Target Start/End: Original strand, 32798510 - 32798546
Alignment:
Q  407 taaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    |||||||||||||||||||||||||  ||||||||||    
T  32798510 taaaagtgagttgaacaataaatataagtgtaaaaat 32798546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 25319170 - 25319109
Alignment:
Q  368 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||| |||||||  || ||||||| ||||||||| ||||||||||||||||||||||||    
T  25319170 agttgaatgtaaagttttttatgtttcgatacatttacgtaaaagtgagttgaacaataaat 25319109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 27096562 - 27096622
Alignment:
Q  369 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    |||||| |||| |||||| |||||| |||| ||||||||||||||| ||||||||||||||    
T  27096562 gttgaatgtaaggtgatttatgtttgaatatatttatgtaaaagtgtgttgaacaataaat 27096622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 427
Target Start/End: Original strand, 17898083 - 17898150
Alignment:
Q  360 tgaaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataa 427  Q
    ||||| ||||||||| ||||||||||| ||||||  ||| ||||| |||||||||| |||||||||||    
T  17898083 tgaaagtgagttgaatgtaaagtgatttatgtttggatatatttaggtaaaagtgaattgaacaataa 17898150  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 429
Target Start/End: Complemental strand, 22683988 - 22683925
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||||||||||| || || ||||||  | ||||||||||||||| ||||||||||||||||    
T  22683988 tgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaagcgagttgaacaataaat 22683925  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 32100380 - 32100339
Alignment:
Q  402 ttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    |||||||||||||||||||||||||||| || ||||||||||    
T  32100380 ttatgtaaaagtgagttgaacaataaatttgagtgtaaaaat 32100339  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 429
Target Start/End: Original strand, 28178802 - 28178869
Alignment:
Q  362 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||| ||||||| ||||||||||| ||| |||||||| || || |||| || |||||||||||||||    
T  28178802 aaaattagttgaatgtaaagtgattaatgcttcaatactttaatataaatgtaagttgaacaataaat 28178869  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 429
Target Start/End: Complemental strand, 33843835 - 33843772
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||| | ||||||||||| ||||||  ||| ||| |||||| |||||||||||||||||||    
T  33843835 tgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaacaataaat 33843772  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 4243479 - 4243434
Alignment:
Q  398 acatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||| |||||||||||||| ||||||||||| || ||||||||||    
T  4243479 acattgatgtaaaagtgagtagaacaataaatttgagtgtaaaaat 4243434  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 10185288 - 10185244
Alignment:
Q  396 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaa 440  Q
    ||||||| ||||||||||||||| |||||||||| || |||||||    
T  10185288 atacattaatgtaaaagtgagttaaacaataaatttgagtgtaaa 10185244  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 55927746 - 55927794
Alignment:
Q  381 gtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    |||||| ||||||  ||||||| |||||||||||| |||||||||||||    
T  55927746 gtgatttatgtttggatacattcatgtaaaagtgacttgaacaataaat 55927794  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 426
Target Start/End: Original strand, 117457 - 117517
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaata 426  Q
    ||||||||| ||||| ||||||||||||  |||||| |||||||||||||||| |||||||    
T  117457 tgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaata 117517  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 37886021 - 37886062
Alignment:
Q  388 atgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  37886021 atgtttgaatacatttgtgtaaaagtgagttgaacaataaat 37886062  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 34443096 - 34443036
Alignment:
Q  369 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    |||||||||||| | ||| |||||| ||||||||||| ||||||||| ||||| |||||||    
T  34443096 gttgaaagtaaaataatttatgtttgaatacatttatataaaagtgaattgaaaaataaat 34443036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 443
Target Start/End: Complemental strand, 10898807 - 10898768
Alignment:
Q  404 atgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  10898807 atgtaaaagtgagttgaacaataaatttgtgtgtaaaaat 10898768  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 8506701 - 8506742
Alignment:
Q  400 atttatgtaaaagtgagttgaacaataaatatgggtgtaaaa 441  Q
    |||||||||||||||| ||||||||||||| || ||||||||    
T  8506701 atttatgtaaaagtgatttgaacaataaatgtgagtgtaaaa 8506742  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 9184987 - 9185039
Alignment:
Q  377 taaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    |||| ||||| |||||| |||||| ||||||| ||||||||||||| ||||||    
T  9184987 taaaatgatttatgtttgaatacacttatgtagaagtgagttgaacgataaat 9185039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 35138984 - 35139060
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaa 442  Q
    ||||||||| ||||| ||||| |||||   ||||||| || | ||||||||||||||||||||| || ||| |||||    
T  35138984 tgagttgaaggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtggaaaaa 35139060  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 443
Target Start/End: Original strand, 46853497 - 46853572
Alignment:
Q  368 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||| ||||||||||| ||||    ||| |||||||||||||||||||||||||||||| || |||| |||||    
T  46853497 agttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaatttgagtgttaaaat 46853572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 444
Target Start/End: Complemental strand, 3776646 - 3776568
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatt 444  Q
    ||||||||| ||||||||||| ||| ||  ||||||| ||||||||||||||| | ||| |||| || |||||||||||    
T  3776646 tgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagtgtaaaaatt 3776568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 37703194 - 37703145
Alignment:
Q  395 aatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatt 444  Q
    |||| |||||||||||||||| ||||||||||||| || |||||||||||    
T  37703194 aatatatttatgtaaaagtgaattgaacaataaatttgagtgtaaaaatt 37703145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 444
Target Start/End: Original strand, 27266765 - 27266833
Alignment:
Q  376 gtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatt 444  Q
    ||||||||||| ||||||  |||  || |||||||||| ||||||||||||||| || |||||||||||    
T  27266765 gtaaagtgatttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtgtaaaaatt 27266833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 429
Target Start/End: Original strand, 35264372 - 35264435
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 429  Q
    ||||||||||||||||||| | ||||||   |||||| |||||||| ||| |||||||||||||    
T  35264372 tgagttgaaagtaaagtgagttatgtttgggtacattcatgtaaaaatgacttgaacaataaat 35264435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 425
Target Start/End: Original strand, 37334995 - 37335054
Alignment:
Q  366 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaat 425  Q
    ||||||||| ||||||||||| |||| | |||||||| || ||||| |||||||||||||    
T  37334995 tgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaat 37335054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 53906727 - 53906672
Alignment:
Q  388 atgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||||||| ||| |||||||||| | ||||||||||||| | |||||||||||    
T  53906727 atgtttcaatatattcatgtaaaagtaaattgaacaataaatttaggtgtaaaaat 53906672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 442
Target Start/End: Original strand, 30300985 - 30301035
Alignment:
Q  392 ttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaa 442  Q
    ||||||| ||||||||||||||| |||||||||||||| || |||| ||||    
T  30300985 ttcaataaatttatgtaaaagtgggttgaacaataaatttgagtgttaaaa 30301035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 4526224 - 4526179
Alignment:
Q  398 acatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 443  Q
    ||||||||||||||||| ||||||| |||||| || ||||||||||    
T  4526224 acatttatgtaaaagtgtgttgaactataaatttgtgtgtaaaaat 4526179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 427
Target Start/End: Original strand, 27499319 - 27499384
Alignment:
Q  362 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataa 427  Q
    ||||||| |||||  |||||||||| ||| || |||| ||||| |||||||||| |||||||||||    
T  27499319 aaaatgaattgaagataaagtgatttatggtttaatatatttacgtaaaagtgatttgaacaataa 27499384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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