View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13128_high_7 (Length: 455)
Name: NF13128_high_7
Description: NF13128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13128_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 55 - 437
Target Start/End: Original strand, 45726022 - 45726407
Alignment:
| Q |
55 |
ggctttggggctgcttaatgggacacttgatcaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaatgat |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45726022 |
ggctttggggctgcttaatgggacacttgatcaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaatgat |
45726121 |
T |
|
| Q |
155 |
tgtcaaaatggtggtgatgatatttggaaggcacatttgatggagaaaattaaaatttcaagtcaagatagaaacaatgaagaggtgtggaagacaaagt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45726122 |
tgtcaaaatggtggtgatgatatttggaaggcacctttgatggagaaaatgcaaattttaagtcaagatagaaacaatgaagaggtgtggaagacaaagt |
45726221 |
T |
|
| Q |
255 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttttgaataaaattcttggttc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45726222 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttttgaataaaattctttgttc |
45726321 |
T |
|
| Q |
355 |
acaatagttatatgaaatatgtattgttgttctaagtattttctt---atgtgtactgaaaacaaatgtaagaggcaattatgcta |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45726322 |
acaatagttatatgaaatatgtattgttgttctaagtattttcttataatgtgtactgaaaacaaatgtaagaggcaattatgcta |
45726407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 55 - 437
Target Start/End: Complemental strand, 27657930 - 27657545
Alignment:
| Q |
55 |
ggctttggggctgcttaatgggacacttgatcaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaatgat |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27657930 |
ggctttggggctgcttaatgggacacttgatcaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaatgat |
27657831 |
T |
|
| Q |
155 |
tgtcaaaatggtggtgatgatatttggaaggcacatttgatggagaaaattaaaatttcaagtcaagatagaaacaatgaagaggtgtggaagacaaagt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27657830 |
tgtcaaaatggtggtgatgatatttggaaggcacctttgatggagaaaatgcaaattttaagtcaagatagaaacaatgaagaggtgtggaagacaaagt |
27657731 |
T |
|
| Q |
255 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttttgaataaaattcttggttc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27657730 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttttgaataaaattctttgttc |
27657631 |
T |
|
| Q |
355 |
acaatagttatatgaaatatgtattgttgttctaagtattttctt---atgtgtactgaaaacaaatgtaagaggcaattatgcta |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27657630 |
acaatagttatatgaaatatgtattgttgttctaagtattttcttataatgtgtactgaaaacaaatgtaagaggcaattatgcta |
27657545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 55 - 437
Target Start/End: Original strand, 4883940 - 4884325
Alignment:
| Q |
55 |
ggctttggggctgcttaatgggacacttgatcaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaatgat |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4883940 |
ggctttggggctgcttaatgggacacttgatcaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaatgat |
4884039 |
T |
|
| Q |
155 |
tgtcaaaatggtggtgatgatatttggaaggcacatttgatggagaaaattaaaatttcaagtcaagatagaaacaatgaagaggtgtggaagacaaagt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
4884040 |
tgtcaaaatggtggtgatgatatttggaaggcacctttgatagagaaaatgcaaattttaagtcaagatagaaacaataaagaggcgtggaaaacaaagt |
4884139 |
T |
|
| Q |
255 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttttgaataaaattcttggttc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4884140 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttttgaataaaattcttggttc |
4884239 |
T |
|
| Q |
355 |
acaatagttatatgaaatatgtattgttgttctaagtattttctt---atgtgtactgaaaacaaatgtaagaggcaattatgcta |
437 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4884240 |
ataatagttatatgaaatatgtattgttgttctaagtattttcttataatgtgtactgaaaacaaatgtaagaggcaattatgcta |
4884325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 55 - 437
Target Start/End: Complemental strand, 38719590 - 38719208
Alignment:
| Q |
55 |
ggctttggggctgcttaatgggacacttgatcaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaatgat |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38719590 |
ggctttggggctgcttaatgggacacttgatcaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagagatgcatgtaatgat |
38719491 |
T |
|
| Q |
155 |
tgtcaaaatggtggtgatgatatttggaaggcacatttgatggagaaaattaaaatttcaagtcaagatagaaacaatgaagaggtgtggaagacaaagt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38719490 |
tgtcaaaatggtggtgatgatatttggaaggcacctttgatggagaaaatgcaaattttaagtcaagatagaaacaatgaagaggtgtggaagacaaagt |
38719391 |
T |
|
| Q |
255 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttttgaataaaattcttggttc |
354 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38719390 |
tgctcgatagaattgatgcattgatgaatgaagtcaagttattgaagtatatgattgtattgttgtgtatcttggtagttttgaataaaattctttgttc |
38719291 |
T |
|
| Q |
355 |
acaatagttatatgaaatatgtattgttgttctaagtattttcttatgtgtactgaaaacaaatgtaagaggcaattatgcta |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38719290 |
acaatagttatatgaaatatgtattgttgttctaagtattttcttatgtgtactgaaaacaaatgtaagaggcaattatgcta |
38719208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 55 - 431
Target Start/End: Complemental strand, 22114299 - 22113920
Alignment:
| Q |
55 |
ggctttggggctgcttaatgggacacttgatcaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaatgat |
154 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22114299 |
ggctttggggctgcttaatgggacatttgaacaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaatgat |
22114200 |
T |
|
| Q |
155 |
tgtcaaaatggtggtgatgatatttggaaggcacatttgatggagaaaattaaaatttcaagtcaagatagaaacaatgaagaggtgtggaagacaaagt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22114199 |
tgtcaaaatggtggtgatgatatttggaaggcacctttgatggagaaaatgcaaattttaagtcaagatagaaacaatgaagaggtgtggaagacaaagt |
22114100 |
T |
|
| Q |
255 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttttgaataaaattcttggttc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22114099 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttggtagttttgaataaaattctttgttc |
22114000 |
T |
|
| Q |
355 |
acaatagttatatgaaatatgtattgttgttctaagtattttctt---atgtgtactgaaaacaaatgtaagaggcaatt |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22113999 |
acaatagttatatgaaatatgtattgttgttctaagtattttcttataatgtgtactgaaaacaaatgtaagaggcaatt |
22113920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 55 - 329
Target Start/End: Original strand, 27972868 - 27973142
Alignment:
| Q |
55 |
ggctttggggctgcttaatgggacacttgatcaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaatgat |
154 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27972868 |
ggctttggggctgcttaatggaatacttgatcaagatgtctggaaggttggactgttgaggaagaatgataatttgaagaaaagaaatgcatgtaatgat |
27972967 |
T |
|
| Q |
155 |
tgtcaaaatggtggtgatgatatttggaaggcacatttgatggagaaaattaaaatttcaagtcaagatagaaacaatgaagaggtgtggaagacaaagt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27972968 |
tgtcaaaatggtggtgatgatatttggaaggcacctttgatggagaaaatgcaaattttaagtcaagatagaaacaatgaaaaggtgtggaagacaaagt |
27973067 |
T |
|
| Q |
255 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttgg |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27973068 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttgg |
27973142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 55 - 329
Target Start/End: Original strand, 28030137 - 28030411
Alignment:
| Q |
55 |
ggctttggggctgcttaatgggacacttgatcaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaatgat |
154 |
Q |
| |
|
||||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28030137 |
ggctttggggctgcttaatggaaaaattgaacaagatgtctggaaggttggactgttgaggaagaaagataatttgaagaaaagaaatgcatgtaatgat |
28030236 |
T |
|
| Q |
155 |
tgtcaaaatggtggtgatgatatttggaaggcacatttgatggagaaaattaaaatttcaagtcaagatagaaacaatgaagaggtgtggaagacaaagt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| || ||| |||||| ||||||| |
|
|
| T |
28030237 |
tgtcaaaatggtggtgatgatatttggaaggcacctttgatggagaaaatgcaaattttaagtcaagatagaaacaataaaaaggagtggaaaacaaagt |
28030336 |
T |
|
| Q |
255 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttgg |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28030337 |
tgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgttgtgtatcttgg |
28030411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 56 - 288
Target Start/End: Complemental strand, 22601308 - 22601078
Alignment:
| Q |
56 |
gctttggggctgcttaatgggacacttgatcaagatgtctggaaggttggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaatgatt |
155 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22601308 |
gctttggggttgcttaatggaacacttgatcaagatgtctataaggctggactgttgaggaagaaggataatttgaagaaaagaaatgcatgtaattatt |
22601209 |
T |
|
| Q |
156 |
gtcaaaatggtggtgatgatatttggaaggcacatttgatggagaaaat-taaaatttcaagtcaagatagaaacaatgaagaggtgtggaagacaaagt |
254 |
Q |
| |
|
| |||||| || | |||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22601208 |
ggcaaaattgtag---tgatatttggaaattacatttgatggagaaaatacaaattttaaagtcaagatagaaacaatgaagaggtgtggaagacagtgc |
22601112 |
T |
|
| Q |
255 |
tgctggatagaattgatgcattgatgaatgaagt |
288 |
Q |
| |
|
| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
22601111 |
tactggatagaattgatgcattgctgactgaagt |
22601078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 22601062 - 22601011
Alignment:
| Q |
330 |
tagttttgaataaaattcttggttcacaatagttatatgaaatatgtattgt |
381 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22601062 |
tagttttgattgaaattcttggttcacaatagttatcataaatatgtattgt |
22601011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 219 - 379
Target Start/End: Complemental strand, 39079894 - 39079739
Alignment:
| Q |
219 |
aagatagaaacaatgaagaggtgtggaagacaaagttgctggatagaattgatgcattgatgaatgaagtcaagttattgaagtacatgatagtattgtt |
318 |
Q |
| |
|
||||||||||||||| ||||| || ||||||| | | ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39079894 |
aagatagaaacaatggggaggtttgaaagacaaggctactgaatagaattgatgcattgatgaatgaagtcaagttattga-----atgatagtattgtt |
39079800 |
T |
|
| Q |
319 |
gtgtatcttggtagttttgaataaaattcttggttcacaatagttatatgaaatatgtatt |
379 |
Q |
| |
|
| ||||| | ||||||||| |||||||||| ||| | ||||||||| | ||||||||||| |
|
|
| T |
39079799 |
ttatatctcgttagttttgattaaaattcttagtttaaaatagttatctcaaatatgtatt |
39079739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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