View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13128_low_12 (Length: 337)
Name: NF13128_low_12
Description: NF13128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13128_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 66 - 330
Target Start/End: Complemental strand, 25771172 - 25770908
Alignment:
| Q |
66 |
taaagcccctaaaccctccataacgaagaaaaagggaaaaggcgacaatggacttcctttcttaggacccttacgtttaaccgcttccttcgtcagacaa |
165 |
Q |
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| T |
25771172 |
taaagcccctaaaccctccataacgaagaaaaagggaaaaggcgacaatggacttcctttcttaggacccttacgtataaccgcttccttcgtcagataa |
25771073 |
T |
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| Q |
166 |
ccattttccgaaagtaataatgatcctaaaagcacacatgctcaaatccaccccctccacttcccatcaaaaccaaaacacaccttagcatataatcaaa |
265 |
Q |
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| T |
25771072 |
ccattttccaaaagtaataatgatcctaaaagcacacatgctcaaatccaccccatccacttcccatcaaaaccaaaacacaccttagcacataatcaaa |
25770973 |
T |
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| Q |
266 |
gaaattccaacttagcgaattataagccttttcaaagtttgatatgattattagacactcctttg |
330 |
Q |
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| T |
25770972 |
gaaattccaacttagcgaattataagccttttcaaagtttgatatgaatattagacactcctttg |
25770908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 279
Target Start/End: Complemental strand, 25754548 - 25754393
Alignment:
| Q |
121 |
cctttcttaggacccttacgtttaaccgcttccttcgtcagacaaccattttccgaaagtaataatgatcctaaaagcacacatgctcaaatccaccccc |
220 |
Q |
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| T |
25754548 |
ccttgcttaggacccttacgaataaccacttcttttgtccgacaaccatttacgaaaaccaataatgacgct-gaagcaaacatgctcacatccaccccc |
25754450 |
T |
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| Q |
221 |
tccacttcccatcaaaaccaaaacacaccttagcatataatcaaagaaattccaactta |
279 |
Q |
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| T |
25754449 |
tccacttcccatcaaaacccaa--atgccttaccacataatctaagaaattccaactta |
25754393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 25771219 - 25771189
Alignment:
| Q |
4 |
tcacatgagaatcaagaattttatacccttt |
34 |
Q |
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| T |
25771219 |
tcacatgagaatcaagaattttatacccttt |
25771189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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