View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13128_low_16 (Length: 266)

Name: NF13128_low_16
Description: NF13128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13128_low_16
NF13128_low_16
[»] chr4 (3 HSPs)
chr4 (17-249)||(15556199-15556431)
chr4 (36-208)||(35162644-35162816)
chr4 (53-129)||(35155641-35155717)
[»] chr3 (16 HSPs)
chr3 (17-208)||(16025671-16025862)
chr3 (18-214)||(46479978-46480174)
chr3 (17-216)||(45883475-45883671)
chr3 (17-124)||(46539184-46539291)
chr3 (17-175)||(47397088-47397246)
chr3 (18-208)||(46498136-46498326)
chr3 (17-208)||(5156432-5156626)
chr3 (39-208)||(46544681-46544850)
chr3 (17-124)||(5160461-5160568)
chr3 (18-124)||(46474117-46474223)
chr3 (18-124)||(46484236-46484342)
chr3 (18-208)||(46236538-46236731)
chr3 (21-92)||(46490900-46490971)
chr3 (59-124)||(51944119-51944184)
chr3 (18-124)||(46554015-46554121)
chr3 (147-208)||(46532224-46532285)
[»] chr8 (3 HSPs)
chr8 (17-206)||(9692467-9692656)
chr8 (17-206)||(9675445-9675634)
chr8 (39-124)||(21464021-21464106)
[»] chr2 (3 HSPs)
chr2 (17-208)||(20144816-20145007)
chr2 (73-208)||(20168767-20168902)
chr2 (17-206)||(20359326-20359515)
[»] chr7 (2 HSPs)
chr7 (73-124)||(16722393-16722444)
chr7 (73-124)||(17699407-17699458)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 15556199 - 15556431
Alignment:
Q  17 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 116  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  15556199 aattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcccggaggtttgactaaaatg 15556298  T
Q  117 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgctgcaacct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15556299 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgctgctgcaacct 15556398  T
Q  217 atggtattttgggaaccaagggtataagccctc 249  Q
    |||||||| ||  | ||| ||||||||||||||    
T  15556399 atggtattatgacagccatgggtataagccctc 15556431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 35162644 - 35162816
Alignment:
Q  36 tcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatggtggactcacttgcgggtc 135  Q
    |||| |||| |||||| ||||  | |||||||||| |||||| || |||||||||||||| | |||||||||||||||||||||||||||||||  ||||    
T  35162644 tcatatgggcttgaaacttctcgtgtgctgaaggatctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactcacttgaaggtc 35162743  T
Q  136 aagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 208  Q
    || |||| || ||||| |||||||| || |||||||||||  || |||| ||  ||||||| | |||||||||    
T  35162744 aaaaccttttagtttccaacatatttcacaagtctttcattgaagtaaatgagaaaggcaccgtagctgctgc 35162816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 35155641 - 35155717
Alignment:
Q  53 ttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatggtggactcacttg 129  Q
    |||| |||||||||| ||||||||| || |||||||||||||| | || ||||||||||||||||||||||| ||||    
T  35155641 ttctcatatgctgaaagacctaggagtgattttacctttctcttctgggggtttgacaaaaatggtggactctcttg 35155717  T

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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 16025671 - 16025862
Alignment:
Q  17 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 116  Q
    |||||||||||||||  | |||||||||||||||| |||||||||||||||||| || ||| | ||||||||||||||||| ||||||||||||||||||    
T  16025671 aattccaaggttcaaggtttcatttgggtttgaaacttctgatatgctgaaggagcttggagtagttttacctttctctcctggaggtttgacaaaaatg 16025770  T
Q  117 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 208  Q
    |||||||  ||||    ||||||||| |||||||||  |||||| || || ||||||||| || |||| |||||||| ||||||| ||||||    
T  16025771 gtggactttcttgaacatcaagacctctttgtttctcgcatatttcacaaatctttcatcgaagtaaatgaagaaggaactgaagttgctgc 16025862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 46479978 - 46480174
Alignment:
Q  18 attccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatgg 117  Q
    ||||||| ||||||||| ||||||||  |||||| |||||||||||| ||||| |||||  |||||||||||||||||   |||||| ||||||| ||||    
T  46479978 attccaaagttcaatatttcatttggacttgaaacttctgatatgctaaaggagctaggtgtggttttacctttctctggtggaggtctgacaaagatgg 46480077  T
Q  118 tggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgctgcaac 214  Q
    || ||||    |   ||||| |||| | |||||| || ||||| || |||||||||||  || |||| ||||||||||||||||||||||| |||||    
T  46480078 tgaactcttcagttagtcaaaacctttgtgtttccaatatatttcacaagtctttcattgaagtaaatgaagaaggcactgaagctgctgcggcaac 46480174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 45883671 - 45883475
Alignment:
Q  17 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 116  Q
    ||||||||| |||||| | ||||||||| |||||| |||| ||||| |||||||  ||||| |||||| |||||||||||  ||| ||||||||||||||    
T  45883671 aattccaagattcaatgtttcatttgggcttgaaacttctaatatgttgaaggagttaggagtggtttcacctttctctcgtggaagtttgacaaaaatg 45883572  T
Q  117 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgctgcaacct 216  Q
    |||||||    | |   ||||||||| | | ||||| |||| || ||  ||||||||||  || | || |||||||||||||||||||||||||||||||    
T  45883571 gtggact---atccaaatcaagacctttatatttctcacatttttcactagtctttcattgaagttaatgaagaaggcactgaagctgctgctgcaacct 45883475  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 46539184 - 46539291
Alignment:
Q  17 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 116  Q
    ||||||||| ||||| || || |||| | |||||| |||| ||||||| ||||| |||||| ||||||||||||||||||  ||||||||||||||||||    
T  46539184 aattccaagattcaaaatttcttttgagcttgaaacttctaatatgcttaaggagctaggaatggttttacctttctctcaaggaggtttgacaaaaatg 46539283  T
Q  117 gtggactc 124  Q
    ||||||||    
T  46539284 gtggactc 46539291  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 47397246 - 47397088
Alignment:
Q  17 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 116  Q
    ||||||||| |||||  | ||| || || |||||| |||||||||| |||||||  ||||| || ||||||||||||| | ||||||||| |||||||||    
T  47397246 aattccaagattcaaattttcaatttggcttgaaacttctgatatgttgaaggagttaggagtgattttacctttctccctcggaggtttaacaaaaatg 47397147  T
Q  117 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcat 175  Q
     ||||||  || ||||||||| |||| |||||||| |||||||| || |||| ||||||    
T  47397146 atggactttctagcgggtcaaaacctttttgtttccaacatatttcagaagtatttcat 47397088  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 46498136 - 46498326
Alignment:
Q  18 attccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatgg 117  Q
    ||||||||||||||||| |||||||   |||||| |||||||||| | ||||| || ||  ||||||| |||||| ||   ||||||||||| |||||||    
T  46498136 attccaaggttcaatatttcatttgaacttgaaacttctgatatgttaaaggagcttggcgtggttttgcctttcactaatggaggtttgactaaaatgg 46498235  T
Q  118 tggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 208  Q
    || ||||   || | ||||| |||| | |||||| || |||||||| |||||||||||  || |||| |||||||||||  ||||||||||    
T  46498236 tgaactctgctgtgagtcaaaacctttatgtttccaaaatattccacaagtctttcattgaagtaaatgaagaaggcaccaaagctgctgc 46498326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 5156432 - 5156626
Alignment:
Q  17 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 116  Q
    ||||||||| ||||| || ||||||| | |||||| ||| |||||| | || || |||||| || ||||||||||| |||  ||||||||||||||||||    
T  5156432 aattccaagattcaaaatttcatttgagcttgaaacttccgatatgttcaaagagctaggagtgattttacctttcactcgtggaggtttgacaaaaatg 5156531  T
Q  117 gtggact---cacttgcgggtcaaga-cctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 208  Q
    |||||||   | |||| ||| ||| | ||| | ||||||||| ||||| || || ||||||||  || |||| |||||||||||||||||||||||    
T  5156532 gtggactctcctcttgtggg-caatagcctttctgtttctaaaatatttcacaaatctttcattgaagtaaatgaagaaggcactgaagctgctgc 5156626  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 46544681 - 46544850
Alignment:
Q  39 tttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatggtggactcacttgcgggtcaag 138  Q
    |||||| |||||| |||||   |||||||||| |||||| ||||||||||||||||| | |||||||||||||| ||||||||||| | |  || ||||     
T  46544681 tttgggcttgaaacttctggcgtgctgaaggagctaggagtggttttacctttctctacaggaggtttgacaaatatggtggactctcctatggatcaaa 46544780  T
Q  139 acctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 208  Q
    ||||   | |||| ||||||||||| |||||||| ||  || |||| ||| | || ||||||||||||||    
T  46544781 accttcatatttccaacatattccacaagtcttttattgaagtaaatgaaaagggaactgaagctgctgc 46544850  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 5160461 - 5160568
Alignment:
Q  17 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 116  Q
    ||||||||| ||||| || ||||||| | |||||| ||||||||||||||||||  ||||| ||  |||||||||| |||  | ||||||||||||||||    
T  5160461 aattccaagattcaaaatttcatttgagcttgaaacttctgatatgctgaaggagttaggagtgactttacctttcactcgtgaaggtttgacaaaaatg 5160560  T
Q  117 gtggactc 124  Q
    ||||||||    
T  5160561 gtggactc 5160568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 46474117 - 46474223
Alignment:
Q  18 attccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatgg 117  Q
    ||||||| ||||||||| ||||||||  |||||| ||| |||||||| ||||| |||||  |||||||||||||||||   | |||  ||||||||||||    
T  46474117 attccaaagttcaatatttcatttggacttgaaacttccgatatgctaaaggagctaggtgtggttttacctttctctggtgaagggctgacaaaaatgg 46474216  T
Q  118 tggactc 124  Q
    |||||||    
T  46474217 tggactc 46474223  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 46484236 - 46484342
Alignment:
Q  18 attccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatgg 117  Q
    ||||||| ||||||||| ||||||||  |||||| ||||| |||||| ||||| |||||  |||||||||||||||||   |||||| ||||||| ||||    
T  46484236 attccaaagttcaatatttcatttggacttgaaacttctgttatgctaaaggagctaggtgtggttttacctttctctggtggaggtctgacaaagatgg 46484335  T
Q  118 tggactc 124  Q
    || ||||    
T  46484336 tgaactc 46484342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 46236731 - 46236538
Alignment:
Q  18 attccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatgg 117  Q
    |||||||| |||||||| || |||||  |||||| | || ||| | |||||||  ||||| || |||||||||||||| | |||||||| |||||||| |    
T  46236731 attccaagattcaatatttcgtttggaattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaattg 46236632  T
Q  118 tgga---ctcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 208  Q
    ||||    ||  ||| |||| || |||| | |||||| |||||||| || || ||||||||  || |||| |||||||||||||||| ||||||    
T  46236631 tggattcttcttttgagggtgaaaacctatatgtttccaacatatttcacaaatctttcattgaagtaaatgaagaaggcactgaagttgctgc 46236538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 46490900 - 46490971
Alignment:
Q  21 ccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttc 92  Q
    |||||||||||||| ||||||||  |||||| |||||||||||||||||| || ||  ||||||||||||||    
T  46490900 ccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctgggcgtggttttacctttc 46490971  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 51944119 - 51944184
Alignment:
Q  59 tatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatggtggactc 124  Q
    |||||| ||| | |||||| |||||||||||||||| || |||||||| |||||||||||||||||    
T  51944119 tatgctaaagaagctaggagtggttttacctttctcacctggaggttttacaaaaatggtggactc 51944184  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 46554121 - 46554015
Alignment:
Q  18 attccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatgg 117  Q
    |||||||| ||| | || || |||||||||||| ||||| |||||||||||||  | ||| || ||||||||||||||   |||||||| |||||||| |    
T  46554121 attccaagtttcgaaatttcttttgggtttgaactttctaatatgctgaaggagttgggagtgattttacctttctctaatggaggtttaacaaaaatag 46554022  T
Q  118 tggactc 124  Q
    | |||||    
T  46554021 tagactc 46554015  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 46532224 - 46532285
Alignment:
Q  147 gtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 208  Q
    |||||||||||||| ||||| ||||||||  || |||| ||| |||||||||||||||||||    
T  46532224 gtttctaacatatttcaaaattctttcattgaagtaaatgaaaaaggcactgaagctgctgc 46532285  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 9692656 - 9692467
Alignment:
Q  17 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 116  Q
    ||||||||| |||||  | ||||||||| |||||| ||||  ||||  ||||||  ||||| ||  ||||||||||||| | ||||||||||||||||||    
T  9692656 aattccaagattcaaattttcatttgggcttgaaacttctcgtatgacgaaggagttaggagtgagtttacctttctcttctggaggtttgacaaaaatg 9692557  T
Q  117 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgct 206  Q
    |||||||| ||||  ||||||||||| | |||||| |||||||| || |||||||||||  || ||||||| ||||||||||||||||||    
T  9692556 gtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgaagtaaacgaggaaggcactgaagctgct 9692467  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 9675634 - 9675445
Alignment:
Q  17 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 116  Q
    ||||||||| |||||  | ||||||||| |||||| ||||   ||| ||||||| |||||| || |||||||||||||| | ||||||||||||||||||    
T  9675634 aattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatg 9675535  T
Q  117 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgct 206  Q
    |||||||| ||||  ||||||||| | | |||||| |||||||| || ||||||  |||  || |||| || ||||||||||||||||||    
T  9675534 gtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtctaccattgaagtaaatgaggaaggcactgaagctgct 9675445  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 21464106 - 21464021
Alignment:
Q  39 tttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatggtggactc 124  Q
    |||||| |||||  ||||||||||||||| || |||||  |||||||||||||||||   |||| |||||||||||||||||||||    
T  21464106 tttgggcttgaatgttctgatatgctgaaagagctaggcgtggttttacctttctctgaaggagctttgacaaaaatggtggactc 21464021  T

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Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 20144816 - 20145007
Alignment:
Q  17 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 116  Q
    ||||||||| |||||| | ||||||||| |||||| |  |||||  || |||||  ||||| |||||||||| |||| ||| ||||||||||||||||||    
T  20144816 aattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtggttttaccattctttcctggaggtttgacaaaaatg 20144915  T
Q  117 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 208  Q
    |||||||| ||||||||||||  ||| | ||||||| ||||||| || ||||||||||||  | ||||||||||||| || |||| ||||||    
T  20144916 gtggactctcttgcgggtcaaagcctttctgtttctcacatatttcacaagtctttcatcagagtaaacgaagaaggtaccgaagttgctgc 20145007  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 208
Target Start/End: Complemental strand, 20168902 - 20168767
Alignment:
Q  73 taggattggttttacctttctctcccggaggtttgacaaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtcttt 172  Q
    ||||| || ||||||| |||| ||| ||||||||||||||||||||||| ||  | |||||||||  ||| ||||||||| ||||||| || ||||||||    
T  20168902 taggagtgattttaccattctttcctggaggtttgacaaaaatggtggattctatcgcgggtcaaagcctttttgtttctcacatatttcacaagtcttt 20168803  T
Q  173 catccaaataaacgaagaaggcactgaagctgctgc 208  Q
    ||||  | ||||||||||||| || |||| ||||||    
T  20168802 catcagagtaaacgaagaaggtaccgaagttgctgc 20168767  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 20359326 - 20359515
Alignment:
Q  17 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 116  Q
    ||||||||| |||||| | ||||||||| |||||| |  |||||  || |||||  ||||| ||  |||||| |||| ||| |||||||||| |||||||    
T  20359326 aattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgactttaccattctttcctggaggtttgaaaaaaatg 20359425  T
Q  117 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgct 206  Q
    ||||| ||  | |||||||||  ||| |||||||||  |||||| || ||||||||||||  |  |||||||||||| || |||| ||||    
T  20359426 gtggattctatcgcgggtcaaagcctttttgtttctcgcatatttcacaagtctttcatcagaggaaacgaagaaggtaccgaagttgct 20359515  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 16722393 - 16722444
Alignment:
Q  73 taggattggttttacctttctctcccggaggtttgacaaaaatggtggactc 124  Q
    ||||||||| |||||||||  |||  ||||||||||||||||||||||||||    
T  16722393 taggattggctttaccttttactctgggaggtttgacaaaaatggtggactc 16722444  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 17699407 - 17699458
Alignment:
Q  73 taggattggttttacctttctctcccggaggtttgacaaaaatggtggactc 124  Q
    ||||||||| |||||||||  |||  ||||||||||||||||||||||||||    
T  17699407 taggattggctttaccttttactctgggaggtttgacaaaaatggtggactc 17699458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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