View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13128_low_17 (Length: 264)

Name: NF13128_low_17
Description: NF13128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13128_low_17
NF13128_low_17
[»] chr3 (2 HSPs)
chr3 (81-246)||(21113800-21113965)
chr3 (11-59)||(33516829-33516878)
[»] chr7 (2 HSPs)
chr7 (11-59)||(12642467-12642516)
chr7 (11-59)||(42709353-42709402)
[»] chr5 (1 HSPs)
chr5 (16-59)||(39948957-39949001)
[»] chr1 (1 HSPs)
chr1 (11-62)||(43669778-43669830)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 246
Target Start/End: Original strand, 21113800 - 21113965
Alignment:
Q  81 cttagtaaataagaaacatggcatgcttgacaaagaaataatggcttgcttagtcatttaatgttaatatttaaagtttgtgtttgaacaatgaataaac 180  Q
    ||||||||| ||||||||||||||||||||| |  ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21113800 cttagtaaacaagaaacatggcatgcttgacgataaaacaatggcttgcttagtcatttaatgttcatatttaaagtttgtgtttgaacaatgaataaac 21113899  T
Q  181 aacaaagcatacggaaacactgtcatggagtggagcctaatgatgcatttgacagtacaatgaaca 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21113900 aacaaagcatacggaaacactgtcatggagtggagcctaatgatgcatttgacagtgcaatgaaca 21113965  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 33516829 - 33516878
Alignment:
Q  11 cacagacaaaatcacaacagcagcac-tgctgccgctgcaggggatccat 59  Q
    |||| ||||||||||||||||||||| | |||||||||||| ||||||||    
T  33516829 cacacacaaaatcacaacagcagcacgtcctgccgctgcagaggatccat 33516878  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 12642516 - 12642467
Alignment:
Q  11 cacagacaaaatcacaacagcagcac-tgctgccgctgcaggggatccat 59  Q
    |||| ||||||||||||||||||||| | |||||||||||| ||||||||    
T  12642516 cacacacaaaatcacaacagcagcacgtcctgccgctgcagaggatccat 12642467  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 42709353 - 42709402
Alignment:
Q  11 cacagacaaaatcacaacagcagcac-tgctgccgctgcaggggatccat 59  Q
    |||| ||||||||||||||||||||| | |||||||||||| ||||||||    
T  42709353 cacacacaaaatcacaacagcagcacgtcctgccgctgcagaggatccat 42709402  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 39949001 - 39948957
Alignment:
Q  16 acaaaatcacaacagcagcac-tgctgccgctgcaggggatccat 59  Q
    ||||||||||||||||||||| | |||||||||||| ||||||||    
T  39949001 acaaaatcacaacagcagcacgtcctgccgctgcagaggatccat 39948957  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 43669778 - 43669830
Alignment:
Q  11 cacagacaaaatcacaacagcagcac-tgctgccgctgcaggggatccattga 62  Q
    |||| ||||||||||||||| ||||| | |||||||||||| |||||||||||    
T  43669778 cacacacaaaatcacaacagtagcacgtcctgccgctgcagaggatccattga 43669830  T

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