View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13128_low_18 (Length: 229)
Name: NF13128_low_18
Description: NF13128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13128_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 31495038 - 31494959
Alignment:
| Q |
1 |
tcgttgacagttattcataataattctgattcatcaaaattctccgaatcttgttgttctatctatgataattctgaatc |
80 |
Q |
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| T |
31495038 |
tcgttgacagttattcataataattctgcttcatcaaaattctccaaatcttgttgttctatctatgataattctgaatc |
31494959 |
T |
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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 31494893 - 31494823
Alignment:
| Q |
146 |
aaaaaacatgttattttctgtgttgaatatgtcaactatttggatcttacaattatgggaatctagtgttcat |
218 |
Q |
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|||||| | ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31494893 |
aaaaaaaaagttattttctgcgttcaat--gtcaactatttggatcttacaattatgggaatctagtgttcat |
31494823 |
T |
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