View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13128_low_4 (Length: 579)
Name: NF13128_low_4
Description: NF13128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13128_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 2377419 - 2377301
Alignment:
| Q |
26 |
gaacctcttcatctgcaataatatggtgaagtgcatgg-aggcgtttgtgtaatttcggcactaagcaagaggtaaagttgta-tatcctgcacacgaat |
123 |
Q |
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| T |
2377419 |
gaacctcttcatctgcaataatatggtgaaatgcatggaaggcgtttgtgtaatttcggcactgagctagaggtaaagttgcaccagccagcacacgaat |
2377320 |
T |
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| Q |
124 |
gagtgccaaactgtaggat |
142 |
Q |
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| T |
2377319 |
gagtgccaaactgtaggat |
2377301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 2377280 - 2377195
Alignment:
| Q |
140 |
gatacttcaacatcgttttctcgtgttaagaagggtttccttatgcatgtttccccccaacattgtcaaagctaatgtaaatccctttg |
228 |
Q |
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| T |
2377280 |
gatacttcaaca-cgttttctcttgttaagaagggtttccttatgcatgtt--cccccaacattgtcaaagttaatgtcaatgcctttg |
2377195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 2376397 - 2376357
Alignment:
| Q |
333 |
aaaattagttataaaggtagtatttaaggagaaataatcca |
373 |
Q |
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| T |
2376397 |
aaaattagttataaaggtagtattaagggaaaaataatcca |
2376357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 1522745 - 1522829
Alignment:
| Q |
142 |
tacttcaacatcgttttctcgtgttaagaagggtttccttatgcatgtttccccccaacattgtcaaagctaatgtaaatccctttg |
228 |
Q |
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| T |
1522745 |
tacttcaacaacattttctcgtgttaataagggtttccttatgcatgtt--cccccaacattgtcaaagttaatgtcaatgcctttg |
1522829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 1523727 - 1523785
Alignment:
| Q |
218 |
aaatccctttgaagcttccaagaatgacctagggagcaaaggaagtcctttcaacagaca |
277 |
Q |
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| T |
1523727 |
aaatccctttgaagcttccaagaatgacctagggagc-aaggaagtcctttcaacagaca |
1523785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 35726413 - 35726310
Alignment:
| Q |
32 |
cttcatctgcaataatatggtgaagtgcatgga-ggcgtttgtgtaatttcggcactaagcaagaggtaaagttgtat-atcctgcacacgaatgagtgc |
129 |
Q |
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| T |
35726413 |
cttcatctgcaccgatacggtaaagtgcctggaaggcgtttgtgtagtttcggcgctgagcaagaggtaaagttgcatcagcctgcatacgaatgagtgc |
35726314 |
T |
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| Q |
130 |
caaa |
133 |
Q |
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|||| |
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| T |
35726313 |
caaa |
35726310 |
T |
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