View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13129_high_1 (Length: 879)
Name: NF13129_high_1
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_high_1 |
 |  |
|
| [»] chr4 (25 HSPs) |
 |  |
|
Alignment Details
Target: chr4 (Bit Score: 737; Significance: 0; HSPs: 25)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 17 - 879
Target Start/End: Complemental strand, 5035358 - 5034505
Alignment:
| Q |
17 |
ttatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatccttactgatactggttgtccccataattgtgctataga |
116 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5035358 |
ttatcaacaagaatgatcttttcttgattgctgattgtttccctttactcgaagaactaatccttactgatactggttgtccccataattgtgctataga |
5035259 |
T |
 |
| Q |
117 |
tagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactcaattaagaatctctgcaagagctgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5035258 |
tagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactcaattaagaatctctgcaagagctgt |
5035159 |
T |
 |
| Q |
217 |
gaccttcttcaagaggtcaaagtggttggtggtcgtgttgcaagatatgcgtttcgtggtcctcgtcctcctctacaatatcaatgagcttcaagaacca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5035158 |
gaccttcttcaagaggtcaaagtggttggtggtcgtgttgctcgatatgcgtttcgtggtcctcgtcctcctctacaatatcaatgagcttcaagaacca |
5035059 |
T |
 |
| Q |
317 |
gttgcagggaaaggagaataaaggctgaacttgcctcaccagtgatgaatgcaagatttcgattaaaacctgctacaaaaactaatttgcacaatggaaa |
416 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5035058 |
gttgcagggaaaggagaataaaagctgaacttgcctcactagtaatgaatgcaagatttcga----------ctacaaaaactaatttgcacaatggaaa |
5034969 |
T |
 |
| Q |
417 |
ccgatttgcagggcacacaataggtctattcgcaagtcatatattttcttgtagaacaaatagtggtattcaagtaaggattcgggtgcaactgttcaca |
516 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5034968 |
ccgatttgcagggcacacaccaggtctattcgcaagtcatatattttcttgtagaacaaataatggtattcaagtaaggattcgggtgcaactgttcaca |
5034869 |
T |
 |
| Q |
517 |
ttaggcatccgcacaacattgaattagatgacttgatttttatatagttttggcagaactggaaggaaaatttactacttcagatgatataaggatgtta |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5034868 |
ttaggcatccgcacaacattgaattagatgacttgatttttatttagttttggcagaactggaaggaaaatttactacttcagatgatctaaggatgtta |
5034769 |
T |
 |
| Q |
617 |
tattcttacttgattttattatcaaacttgtgtctagtagatgttcgtttgttactcaatc-tgttttatgtgcttagaatgttaataattattcaaaat |
715 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| | |
|
|
| T |
5034768 |
tattcttacttgattttattatcaaacttgtgtctagtagatgttcgtttgttactcaatcttcctttatgtgcttagaatgttaataattattcaaagt |
5034669 |
T |
 |
| Q |
716 |
cttttaccagttttatgtttaacattcaacacatctttttaatttggttgaatctccgaatatctatttcattcattttgatatgaaattagaaacttct |
815 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
5034668 |
cttttaccagttttatgtttaacattcaatacatctttttaatttggttgaatctcctgatatctatttcattcatattgatgtgaaattagaaacttct |
5034569 |
T |
 |
| Q |
816 |
ccaagcatggtgaaatagtcattgttcatgacttaacacttcatgtctttgcactcatcttctt |
879 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5034568 |
ccaagcatggtgaaatagtcattgttcatgacttaacacttcatgtctttgcactcatcttctt |
5034505 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 2534048 - 2533820
Alignment:
| Q |
18 |
tatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatccttactgatactggttgtccccataattgtgctatagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
2534048 |
tatcaacaagaatgatctcttcttgattgctgattgtttccctttacttgaagaactcatccttaccgactctggttgtccccataattgtgcgatagat |
2533949 |
T |
 |
| Q |
118 |
agtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactcaattaagaatctctgcaagagctgtg |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
2533948 |
agtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactcataatatcgtcagtgagcactcaattaaaaatctctgcaagaactgtg |
2533849 |
T |
 |
| Q |
218 |
accttcttcaagaggtcaaagtggttggtggt |
249 |
Q |
| |
|
|| ||||||||| ||||||||||||||||| |
|
|
| T |
2533848 |
ac---cttcaagagctcaaagtggttggtggt |
2533820 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 2525491 - 2525262
Alignment:
| Q |
17 |
ttatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatccttactgatactggttgtccccataattgtgctataga |
116 |
Q |
| |
|
|||| |||||||||||||| |||| || ||||||||||||||| |||||||||||||||||||||| || |||||||||| ||| |||| ||||| |
|
|
| T |
2525491 |
ttattaacaagaatgatctgctcttcattgctgattgtttccctctactcgaagaactcatccttaccgacactggttgtcgtagtaactgtgtgataga |
2525392 |
T |
 |
| Q |
117 |
tagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactcaattaagaatctctgcaagagctgt |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| ||| ||||||| ||||||||||||||| || |||| |
|
|
| T |
2525391 |
tagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactcatactatcgcgggtcaacactcagttaagaatctctgcaggaactgt |
2525292 |
T |
 |
| Q |
217 |
gaccttcttcaagaggtcaaagtggttggtggt |
249 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |
|
|
| T |
2525291 |
gac---cttcaagaggtcaaagtggttggtggt |
2525262 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 2490864 - 2490641
Alignment:
| Q |
17 |
ttatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatccttactgatactggttgtccccataattgtgctataga |
116 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||||| || || | ||| |||||| |||| || |||| |
|
|
| T |
2490864 |
ttatcaacaagaatgatctcttttttattgctgattgtttccctttactcgacgaactcatcctaaccgacaacggtaatccccaaaattatgtgctaga |
2490765 |
T |
 |
| Q |
117 |
tagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactcaattaagaatctctgcaagagctgt |
216 |
Q |
| |
|
| |||||||||||| || | ||||||||||||||||| |||||||||| || |||| || | ||| |||||| |||| |||||||||||| |||| |
|
|
| T |
2490764 |
caatgatgatcaattattggtgcttcccaaactccgcaagattgctttatctcttaatttcattggtaatcactcagttaaagatctctgcaagaactgt |
2490665 |
T |
 |
| Q |
217 |
gaccttcttcaagaggtcaaagtg |
240 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
2490664 |
gaccttcttcaagaggccaaagtg |
2490641 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 313 - 445
Target Start/End: Complemental strand, 2533246 - 2533112
Alignment:
| Q |
313 |
accagttgcagggaaaggagaataaaggctgaacttgcctcaccagtgatgaatgcaagatttcgattaaaacctgctacaaaaactaatttgcacaatg |
412 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2533246 |
accacttgcagggaatggagaataagagctgaacatgcctcacaagtgatgaatgcaggatttcgattaaaacctgctgcaaaaactaatttgcacaaat |
2533147 |
T |
 |
| Q |
413 |
gaaa--ccgatttgcagggcacacaataggtctat |
445 |
Q |
| |
|
|| | | |||||||||||||||||| |||||||| |
|
|
| T |
2533146 |
gagatgctgatttgcagggcacacaacaggtctat |
2533112 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 765 - 879
Target Start/End: Complemental strand, 2489483 - 2489369
Alignment:
| Q |
765 |
gaatctccgaatatctatttcattcattttgatatgaaattagaaacttctccaagcatggtgaaatagtcattgttcatgacttaacacttcatgtctt |
864 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | |||||||||||||||| |||| ||||||||| |||||||||| |||| ||||| | |||||| |
|
|
| T |
2489483 |
gaatctctaaatatctatttcattcattttgattttaaattagaaacttctcgaagcctggtgaaatggtcattgttctcgactcaacaccacttgtctt |
2489384 |
T |
 |
| Q |
865 |
tgcactcatcttctt |
879 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2489383 |
tgcactcatcttctt |
2489369 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 2518968 - 2518812
Alignment:
| Q |
18 |
tatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatccttactgatactggttgtccccataattgtgctatagat |
117 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||| || | || || ||| | |||||| |
|
|
| T |
2518968 |
tatccacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaactcatccttaccgataccatttataccaatgatttggtgatagat |
2518869 |
T |
 |
| Q |
118 |
agtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaat |
174 |
Q |
| |
|
| |||| ||||||||| |||||||| |||||||||| |||||||||| || ||||| |
|
|
| T |
2518868 |
attgattttcaattcttggcgcttcctaaactccgcaagattgctttatcttgtaat |
2518812 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 2471791 - 2471733
Alignment:
| Q |
18 |
tatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactca |
76 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
2471791 |
tatcgacaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactca |
2471733 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 5106632 - 5106686
Alignment:
| Q |
23 |
acaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcat |
77 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
5106632 |
acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactcat |
5106686 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 2467277 - 2467212
Alignment:
| Q |
18 |
tatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatccttac |
83 |
Q |
| |
|
|||| ||||||| ||||| ||||| || |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2467277 |
tatcgacaagaacgatcttttcttcattgctgattgtttccctttactcgaagagctcatccttac |
2467212 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 2367981 - 2368033
Alignment:
| Q |
23 |
acaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactc |
75 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
2367981 |
acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactc |
2368033 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 804 - 879
Target Start/End: Complemental strand, 2524500 - 2524425
Alignment:
| Q |
804 |
ttagaaacttctccaagcatggtgaaatagtcattgttcatgacttaacacttcatgtctttgcactcatcttctt |
879 |
Q |
| |
|
||||||||||||| |||||| || |||| | ||||||| ||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
2524500 |
ttagaaacttctctaagcatagttaaattgacattgttattgactcaacacttcatttctttgcactcatcttctt |
2524425 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 2477201 - 2477091
Alignment:
| Q |
120 |
tgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactcaattaagaatctctgcaagagctgtgac |
219 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| |||||||||| || |||| || | ||| ||| || ||| | |||||||||||| ||| ||| |
|
|
| T |
2477201 |
tgatgatcaattgttggcgcttcccaaactccgcaagattgctttatctcctaatttcatgggtcgacgatctattgactatctctgcaagaactgcgac |
2477102 |
T |
 |
| Q |
220 |
cttcttcaaga |
230 |
Q |
| |
|
||||||||||| |
|
|
| T |
2477101 |
cttcttcaaga |
2477091 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 2621482 - 2621540
Alignment:
| Q |
24 |
caagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatcctta |
82 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2621482 |
caagaatgatctattcttccttgctgattgtttccctttactcgaagaactcaacctta |
2621540 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 2460336 - 2460279
Alignment:
| Q |
23 |
acaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatcct |
80 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||| || |||||||||||||||||||| |
|
|
| T |
2460336 |
acaagaatcatctcttcttaattgctgattgttttccattactcgaagaactcatcct |
2460279 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 2373547 - 2373598
Alignment:
| Q |
23 |
acaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaact |
74 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
2373547 |
acaagagtgatctcttcttcattgctgattgtttccctttgctcgaagaact |
2373598 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 2547280 - 2547221
Alignment:
| Q |
17 |
ttatcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaactca |
76 |
Q |
| |
|
|||||| |||||||||| | ||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
2547280 |
ttatcagcaagaatgatttattcttcattgctgattgtttccctttacttgaagaactca |
2547221 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 12124573 - 12124524
Alignment:
| Q |
25 |
aagaatgatctcttcttgatcgctgattgtttccctttactcgaagaact |
74 |
Q |
| |
|
|||| |||||||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
12124573 |
aagagtgatctcttcttcattgctgattgtttccctttactagaagaact |
12124524 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 2489630 - 2489582
Alignment:
| Q |
556 |
ttatatagttttggcagaactggaaggaaaatttactacttcagatgat |
604 |
Q |
| |
|
||||| |||| |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
2489630 |
ttataaagttctggcagaacttgaatgaaaatttactacttcagatgat |
2489582 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 2391333 - 2391388
Alignment:
| Q |
19 |
atcaacaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaact |
74 |
Q |
| |
|
||||||||||| ||| ||||||| || | |||||| |||||||||||||||||||| |
|
|
| T |
2391333 |
atcaacaagaaggatatcttcttcattgttgattgcttccctttactcgaagaact |
2391388 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 455 - 509
Target Start/End: Complemental strand, 2489740 - 2489687
Alignment:
| Q |
455 |
atatattttcttgtagaacaaatagtggtattcaagtaaggattcgggtgcaact |
509 |
Q |
| |
|
||||||||| |||||||||||| || |||| ||||||||||||| |||||||||| |
|
|
| T |
2489740 |
atatatttt-ttgtagaacaaacagaggtagtcaagtaaggatttgggtgcaact |
2489687 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 2477309 - 2477256
Alignment:
| Q |
27 |
gaatgatctcttcttgatcgctgattgtttccctttactcgaagaactcatcct |
80 |
Q |
| |
|
||||||||||||||| || || ||||||||||||| || |||||||||||||| |
|
|
| T |
2477309 |
gaatgatctcttcttcatttctaattgtttccctttgctagaagaactcatcct |
2477256 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 2546874 - 2546825
Alignment:
| Q |
23 |
acaagaatgatctcttcttgatcgctgattgtttccctttactcgaagaa |
72 |
Q |
| |
|
||||||||||| | ||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
2546874 |
acaagaatgatttattcttcattgctgattgttttcctttactcgaagaa |
2546825 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 2625589 - 2625630
Alignment:
| Q |
35 |
tcttcttgatcgctgattgtttccctttactcgaagaactca |
76 |
Q |
| |
|
||||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
2625589 |
tcttctttattgttgattgtttccctttactcgaagaactca |
2625630 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 5095577 - 5095638
Alignment:
| Q |
453 |
tcatatattttcttgtagaacaaatagtggtattcaagtaaggattcgggtgcaactgttca |
514 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||| ||||||| |||| |||||||||||||| |
|
|
| T |
5095577 |
tcatgtattttcttgaagaacaaatagaggtagtcaagtacagattttggtgcaactgttca |
5095638 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 18314718 - 18314763
Alignment:
| Q |
30 |
tgatctcttcttgatcgctgattgtttccctttactcgaagaactc |
75 |
Q |
| |
|
|||||||||| | || ||||||||||||||||| |||||||||||| |
|
|
| T |
18314718 |
tgatctcttcctcattgctgattgtttccctttgctcgaagaactc |
18314763 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University