View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_high_11 (Length: 391)
Name: NF13129_high_11
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 131 - 382
Target Start/End: Original strand, 40376549 - 40376800
Alignment:
| Q |
131 |
gtaggtggatcttaagctaaaaatttgccgtggatcatcggtgaagagaattttggtacgagaagcaaatgcttattctgcaactcatgttattgttgga |
230 |
Q |
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| T |
40376549 |
gtaggtggatcttaaactaaaaatttgccgtggatcatcggtgaagagaattttggtacgagaagcaaatgcttattctgcatctcatgttattgttgga |
40376648 |
T |
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| Q |
231 |
agtgttcatggttttcatagaattcggtcatctagctctgtagctaagtattgtgctaaaaagttatccaaggactgttgtgttcttgctgtgaataatg |
330 |
Q |
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| T |
40376649 |
agtgttcatggttttcatagaattcggtcatctagctctgtagctaagtattgtgctaaaaagttatccaaggactgttgtgttcttgctgtgaataatg |
40376748 |
T |
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| Q |
331 |
gaaaggttgtgtacaagcgtgacagcttggcagcatcaactgttgatgatgt |
382 |
Q |
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| T |
40376749 |
gaaaggttgtgtacaagcgtgacagcttggcagcatcaactgttgctgatgt |
40376800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 40376435 - 40376485
Alignment:
| Q |
18 |
gttaatgcataaaatttaatattctcacctccaattatgatcctaataagc |
68 |
Q |
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| T |
40376435 |
gttaatgcataaaatttaatattctcacctccaattatgatcctaataagc |
40376485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 10258082 - 10258182
Alignment:
| Q |
131 |
gtaggtggatcttaagctaaaaatttgccgtggatcatcggtgaagagaattttggtacgagaagcaaatgcttattctgcaactcatgttattgttgga |
230 |
Q |
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|||||||||||| ||||||||||||||||| || || || |||| |||||||||||| |||||||||||| |||| ||||||||||||||| |||||| |
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| T |
10258082 |
gtaggtggatctgaagctaaaaatttgccggggttcgtcagtgaggagaattttggttagagaagcaaatgaatattgtgcaactcatgttatagttgga |
10258181 |
T |
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| Q |
231 |
a |
231 |
Q |
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| T |
10258182 |
a |
10258182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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