View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_high_12 (Length: 385)
Name: NF13129_high_12
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 31081568 - 31081210
Alignment:
| Q |
13 |
aatattgtcatcaatccacctacccactccaacaccacatctctaccacctatcatagttttgagtgcaataaatttgaattttgaacacaccaatataa |
112 |
Q |
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| T |
31081568 |
aatattgtcatcaatccacctacccactccaacaccacatctctaccaccaatcataattttgagtgcaataaatttgaattttgaacccaccaatataa |
31081469 |
T |
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| Q |
113 |
cactaaacgtccacataatcatattttaattaattaagtctagtgaaaagagggtaattgtgaaaataatttatggcctaaaaaatcaatatgtagcaaa |
212 |
Q |
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| T |
31081468 |
cactaaacgtccacataatcatattttaattaattaagtctagtgaaaagagggtaattgtgaaaataatttatggcctaaaaaatcaatatgtagcaaa |
31081369 |
T |
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| Q |
213 |
ag-nnnnnnnnncttaaaaagtagttcatacataataaacgtctaactatatctaaatgttatttggccaaagacaaagaaatagtattaaaaagaaata |
311 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31081368 |
agaaaaagaaaacttaaaaagtagttcatacataataaacgtctaactatatctaaatgttatttggccaaagacaaagaaatagtattaaaaagaaata |
31081269 |
T |
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| Q |
312 |
aagaaatgtatttcattcccaaatttgccacaagaaaatattggccttacctaactttt |
370 |
Q |
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| T |
31081268 |
aagaaatgtatttcattcccaaatttgccacaagaaaatattggccttatctaactttt |
31081210 |
T |
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