View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_high_14 (Length: 357)
Name: NF13129_high_14
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 43004892 - 43005220
Alignment:
| Q |
11 |
cacagaccacgacaaataaatagttaaccattattgtaagatggaaaagaaaactattggccccaaaggaagtgtatcatagtagaaaaggacaaaaaga |
110 |
Q |
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| T |
43004892 |
cacagaccacgacaaataaatagttaaccattattgtaagatggaaaagaaaactattggccccaaaggaagtgtatcatagtagaaaaggacaaaaaga |
43004991 |
T |
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| Q |
111 |
tgggcacatgctcacatgatttagcacatgaaaaactctataccccccagggttacgacaagaactccctgtgtgctacgtttatggtgaatatatataa |
210 |
Q |
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| T |
43004992 |
tgggcacatgctcacatgatttagcacatgaaaaactctataccccccagggttacgacaagaactccctgtgtgctacgtttatggtgaatatatataa |
43005091 |
T |
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| Q |
211 |
atatagacttcaactatattctatatttcctttnnnnnnnnnncaaactatattctatatttgacccacctcttctatcatgattcgtatctatctttca |
310 |
Q |
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| T |
43005092 |
atatatacttcaactatattctatatttcctttaaaaaaaa---aaactatattctatatttgacccacctcttctatcatgattcgtatctatctttca |
43005188 |
T |
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| Q |
311 |
tatattgtatttactttaatatacgtactttt |
342 |
Q |
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|||||||||||||||| ||||||||||||||| |
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| T |
43005189 |
tatattgtatttacttcaatatacgtactttt |
43005220 |
T |
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