View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_high_15 (Length: 356)
Name: NF13129_high_15
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_high_15 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 2153763 - 2153465
Alignment:
| Q |
20 |
cattgctcataaaatatgtgagttttgaactatatgaacctcccttaattttcttatacttattccaccatgccatgtagctactttcaccaaggaaaat |
119 |
Q |
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||||||||||||||| |||||||||||||| ||||||| || | |||||||||||||| | | ||||||||||||||||||||||||||| ||||||||| |
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| T |
2153763 |
cattgctcataaaatttgtgagttttgaaccatatgaagctgctttaattttcttatattgactccaccatgccatgtagctactttcactaaggaaaat |
2153664 |
T |
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| Q |
120 |
ctctggtgacactgcatattccttgagcaatccatacacataattctcaaattcaaccaagtttcttgttgcctcatccttttcaatgtcactagatttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
2153663 |
ctctggtgacactgcatattccttgagcaatccatacacataattctcaaattcaaccaattttcttgttgcctcatccttttcaatgtcactaagtttt |
2153564 |
T |
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| Q |
220 |
tcaaccaatttcttgcatgaaataagagcctcttcaacatatgcccaaaagcaagaatctagagttaaaattgattccacattctctctagtaacattt |
318 |
Q |
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| T |
2153563 |
tcatccaattttttgcatgaaataagagcctcttcaacatatgcccaaaagcaagaatctagagttaaaattgattccactttatctttagtaacattt |
2153465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 2155335 - 2155278
Alignment:
| Q |
20 |
cattgctcataaaatatgtgagttttgaactatatgaacctcccttaattttcttata |
77 |
Q |
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| T |
2155335 |
cattgctcataaagtatgtgagttttgaaatatatgaagctcccttaattttcttata |
2155278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 2168780 - 2168722
Alignment:
| Q |
246 |
agcctcttcaacatatgcccaaaagcaagaatctagagttaaaattgattccacattct |
304 |
Q |
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| T |
2168780 |
agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccacattct |
2168722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 2180413 - 2180355
Alignment:
| Q |
246 |
agcctcttcaacatatgcccaaaagcaagaatctagagttaaaattgattccacattct |
304 |
Q |
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| T |
2180413 |
agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccacattct |
2180355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 2162617 - 2162573
Alignment:
| Q |
246 |
agcctcttcaacatatgcccaaaagcaagaatctagagttaaaat |
290 |
Q |
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| T |
2162617 |
agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaat |
2162573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 2207637 - 2207604
Alignment:
| Q |
246 |
agcctcttcaacatatgcccaaaagcaagaatct |
279 |
Q |
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| T |
2207637 |
agcctcttcaacatgtgcccaaaagcaagaatct |
2207604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 2157781 - 2157745
Alignment:
| Q |
21 |
attgctcataaaatatgtgagttttgaactatatgaa |
57 |
Q |
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| T |
2157781 |
attgctcacaaaatatgtgagttttgaattatatgaa |
2157745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 27784894 - 27784970
Alignment:
| Q |
234 |
gcatgaaataagagcctcttcaacatatgcccaaaagcaagaatctagagttaaaattgattccacattctctctag |
310 |
Q |
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| T |
27784894 |
gcataaaagaagagcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctttctag |
27784970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 14487 - 14531
Alignment:
| Q |
246 |
agcctcttcaacatatgcccaaaagcaagaatctagagttaaaat |
290 |
Q |
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| T |
14487 |
agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaat |
14531 |
T |
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