View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_high_17 (Length: 277)
Name: NF13129_high_17
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 40804147 - 40804417
Alignment:
| Q |
7 |
catttatctaataatcttactatcaaggtgaacatcatcaagggattaaaacaaaagagaaacataattggtaatatatttgaatctcaacacagtcaaa |
106 |
Q |
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| T |
40804147 |
catttatctaataatcttactatcaaggtgaacatcatcaagggactaaaacaaaagagaaacataattggtaatatatttgaatctcaacacagtcaaa |
40804246 |
T |
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| Q |
107 |
gaacatatttaaactcagtcattaatgcttaatcaattattgactcaactcaagtttttaagaggaaagataagtgactggtcataaatcattggtgttt |
206 |
Q |
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| T |
40804247 |
gaacatatttaaactcagtcattaatgcttaatcaattattgactcaactcaagtttttaagaggaaagataagcgactggtcataaatcattggtgttt |
40804346 |
T |
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| Q |
207 |
caagcctaataaagggaacaatacatatcaatttcttgacaatgacgaccctttaatatctttgtttcttc |
277 |
Q |
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| T |
40804347 |
caagcctaataaagggaacaatacatatcaatttcttgacaatgacgaccctttaatatctttgtttcttc |
40804417 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 5115847 - 5115901
Alignment:
| Q |
197 |
attggtgtttcaagcctaataaagggaacaatacatatcaatttcttgacaatga |
251 |
Q |
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| T |
5115847 |
attggtgtttcaagcccaataacaggaacaagacatatcattttcttgacaatga |
5115901 |
T |
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