View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13129_high_25 (Length: 223)

Name: NF13129_high_25
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13129_high_25
NF13129_high_25
[»] chr4 (1 HSPs)
chr4 (12-204)||(52413045-52413237)
[»] chr1 (5 HSPs)
chr1 (53-102)||(51100879-51100928)
chr1 (56-102)||(43568498-43568544)
chr1 (53-102)||(23374863-23374912)
chr1 (53-97)||(43569192-43569236)
chr1 (68-104)||(51099805-51099841)
[»] chr8 (1 HSPs)
chr8 (53-102)||(10366040-10366089)
[»] chr5 (1 HSPs)
chr5 (54-103)||(42910044-42910093)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 52413237 - 52413045
Alignment:
Q  12 agattattcttgtcagaaatagggttgagaagtaaatgccaaacttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccaccttgactgag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52413237 agattattcttgtcagaaatagggttgagaagtaaatgccaaacttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccaccttgactgag 52413138  T
Q  112 aattgagttatagaaaagttttgtacatatgacccgatttaaggtagaccacttcttaatatgataactatgagtgaagcctttgacacactt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52413137 aattgagttatagaaaagttttgtacatatgacccgatttaaggtagaccacttcttaatatgataactatgagtgaagcctttgacacactt 52413045  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 51100879 - 51100928
Alignment:
Q  53 aacttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccacc 102  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51100879 aacttgtgtatggtgcacaaatttgtgcattgtgtatagtaaatgccacc 51100928  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 43568544 - 43568498
Alignment:
Q  56 ttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccacc 102  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  43568544 ttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatggcacc 43568498  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 23374863 - 23374912
Alignment:
Q  53 aacttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccacc 102  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  23374863 aacttgtgtatggtgcacaaatttgtgcattgtgtatagtaaatggcacc 23374912  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 43569192 - 43569236
Alignment:
Q  53 aacttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatg 97  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||    
T  43569192 aacttatgtatagtgcacaaatttgtgctttgtgtatagtaaatg 43569236  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 51099841 - 51099805
Alignment:
Q  68 cacaaatttgtgctttgtgtatagtaaatgccacctt 104  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  51099841 cacaaatttgtgctttgtgtatattaaatggcacctt 51099805  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 10366089 - 10366040
Alignment:
Q  53 aacttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccacc 102  Q
    |||||||||||| ||||||||||||||  ||||| || ||||||||||||    
T  10366089 aacttgtgtatgatgcacaaatttgtgtcttgtgcattgtaaatgccacc 10366040  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 42910044 - 42910093
Alignment:
Q  54 acttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccacct 103  Q
    ||||||||||||||||||||||| || |||||| ||  ||||||||||||    
T  42910044 acttgtgtatggtgcacaaatttatgttttgtgcatgctaaatgccacct 42910093  T

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