View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_low_10 (Length: 399)
Name: NF13129_low_10
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 34349699 - 34349302
Alignment:
| Q |
1 |
catgttaataaattaaccacacttttacacccatcagcacatatgcaggatttgggataagatttcgactttcaactgcctgttgtggagatgaccgcta |
100 |
Q |
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| T |
34349699 |
catgtgaataagataaccacacttttacacccatcagcacatatgcaggatttgggataagataacgactttcatctgcctgttgtggagatgaccgcta |
34349600 |
T |
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| Q |
101 |
cgctggatgatttcacgtgtcttttatacatccccgttgaagggaaaatgatggatcacgagnnnnnnnntctctcaggagacgggtatccagttgatga |
200 |
Q |
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| T |
34349599 |
cgctggatgatttgacgtgtcttttatacatccccgttgaagggaaaatgatggatcacgagaaaaaga-tctctcaggagacgggtatccagttgacga |
34349501 |
T |
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| Q |
201 |
ttgacttgtttggtgttgtcgagcatactgcgattgatgagagagctaactagtttggtgctttttcaaatattcccttcctaaagagaatacgtgagga |
300 |
Q |
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| T |
34349500 |
ttgacttgtttggtgttgtcgagcatactgcgattgatgagagagctaactagtttggtgctttttcaaatattcccttcctaaagagaatacgcgagga |
34349401 |
T |
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| Q |
301 |
gcacctcaatatggcaacttagtgggagaatgagggaaataatctgatacagtggtgtgtgagagctttcttgctttatttgatttgttttactatatt |
399 |
Q |
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| T |
34349400 |
gcacctcaatatggcaacttagtgggagaatgagggaaataatccgatacaatggtgtgtgagagctttcttgctttatttgatttgttttactatatt |
34349302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 332
Target Start/End: Original strand, 16782302 - 16782424
Alignment:
| Q |
210 |
ttggtgttgtcgagcatactgcgattgatgagagagctaactagtttggtgctttttcaaatattcccttcctaaagagaatacgtgaggagcacctcaa |
309 |
Q |
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| T |
16782302 |
ttggtgttgtcgagcatcgtgcaattgatgagtgtgatcaccagtttggggattttataaatattccactcctaaagggaatatatgacgagcacctcaa |
16782401 |
T |
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| Q |
310 |
tatggcaacttagtgggagaatg |
332 |
Q |
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| T |
16782402 |
tatggaaactcagttggagaatg |
16782424 |
T |
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