View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13129_low_12 (Length: 385)

Name: NF13129_low_12
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13129_low_12
NF13129_low_12
[»] chr1 (1 HSPs)
chr1 (13-370)||(31081210-31081568)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 31081568 - 31081210
Alignment:
Q  13 aatattgtcatcaatccacctacccactccaacaccacatctctaccacctatcatagttttgagtgcaataaatttgaattttgaacacaccaatataa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  31081568 aatattgtcatcaatccacctacccactccaacaccacatctctaccaccaatcataattttgagtgcaataaatttgaattttgaacccaccaatataa 31081469  T
Q  113 cactaaacgtccacataatcatattttaattaattaagtctagtgaaaagagggtaattgtgaaaataatttatggcctaaaaaatcaatatgtagcaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081468 cactaaacgtccacataatcatattttaattaattaagtctagtgaaaagagggtaattgtgaaaataatttatggcctaaaaaatcaatatgtagcaaa 31081369  T
Q  213 ag-nnnnnnnnncttaaaaagtagttcatacataataaacgtctaactatatctaaatgttatttggccaaagacaaagaaatagtattaaaaagaaata 311  Q
    ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081368 agaaaaagaaaacttaaaaagtagttcatacataataaacgtctaactatatctaaatgttatttggccaaagacaaagaaatagtattaaaaagaaata 31081269  T
Q  312 aagaaatgtatttcattcccaaatttgccacaagaaaatattggccttacctaactttt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31081268 aagaaatgtatttcattcccaaatttgccacaagaaaatattggccttatctaactttt 31081210  T

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