View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13129_low_2 (Length: 647)

Name: NF13129_low_2
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13129_low_2
NF13129_low_2
[»] chr5 (3 HSPs)
chr5 (21-638)||(20684333-20684951)
chr5 (19-87)||(42687844-42687912)
chr5 (313-400)||(20054660-20054749)
[»] chr4 (1 HSPs)
chr4 (370-529)||(21276328-21276487)
[»] chr1 (5 HSPs)
chr1 (354-529)||(8235730-8235906)
chr1 (372-534)||(3363517-3363678)
chr1 (19-85)||(8236119-8236185)
chr1 (88-124)||(27318401-27318437)
chr1 (19-88)||(27318472-27318541)
[»] chr3 (2 HSPs)
chr3 (370-529)||(13833628-13833786)
chr3 (19-88)||(16999335-16999404)
[»] chr7 (6 HSPs)
chr7 (19-88)||(11242346-11242415)
chr7 (19-92)||(6847992-6848065)
chr7 (19-75)||(11268968-11269024)
chr7 (21-87)||(11281165-11281231)
chr7 (88-124)||(11269070-11269106)
chr7 (88-124)||(11281095-11281131)
[»] chr8 (4 HSPs)
chr8 (372-455)||(15201463-15201544)
chr8 (372-455)||(15207220-15207303)
chr8 (88-124)||(9798738-9798774)
chr8 (21-88)||(9798640-9798703)
[»] chr2 (1 HSPs)
chr2 (603-642)||(19096534-19096573)


Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 21 - 638
Target Start/End: Complemental strand, 20684951 - 20684333
Alignment:
Q  21 aagatgattacaagtatgatggaggacctatttatagcctgaaacctcaagacaagacattaaactcgttttgtaacagctccagctgacagcaaaaacg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  20684951 aagatgattacaagtatgatggaggacctatttatagcctgaaacctcaagacaagacattaaactcgttttgtaacagctccagctgacagcaaaaaca 20684852  T
Q  121 cacgatcaaggcttcaggtcgtgcacttttcagcttctgcacacagggaacgcacggtccccttacaagctaacacactaaaacgtacggccgtgcataa 220  Q
    |||||||  ||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||||||||    
T  20684851 cacgatctgggcttcagaccgtgcacttttcagcttctgcacacaaggaacgcacggtccccttacaagccaacacactaaaacgcacggtcgtgcataa 20684752  T
Q  221 aatgcacaggccgtgcgtatgttccctggactttctctctttgaaacacacgacctccccaatttagcgctaaaacgcatgatcatgtgtagaaaacgca 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  20684751 aatgcacaggccgtgcgtatgttccctggactttctctctttgaaacacacgacctccccaatttagccctaaaacgcacgatcatgtgtagaaaacgca 20684652  T
Q  321 cgaaccgtgctcttcttcctactttgcccg-tttttcatgcattcttgaccttttcttgcccaaacttcaaccaaaccatcacacttctttgataattaa 419  Q
    ||||||||||||||||||||||||| |||| |||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  20684651 cgaaccgtgctcttcttcctactttccccgttttttcatgcattccttaccttattttgcccaaacttcaaccaaaccatcacacttctttgataattaa 20684552  T
Q  420 cctgaaacgaaaaccatagcttttgtagtaaaatagctcaagaaattcgactaaaactaacgagaccttaataaattaaaatgccaaaagcaataaaaac 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20684551 cctgaaacgaaaaccatagcttttgtagtaaaatagctcaagaaattcgattaaaactaacgagaccttattaaattaaaatgccaaaagcaataaaaac 20684452  T
Q  520 tacgacttattatccatgttctctatttgcattgtgtgaattataatgtagtcgtatttgctttgaaaatgaagttgtatcacaatactattgcatgaag 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20684451 tacgacttattatccatgttctctatttgcattgtgtgaattataatgtagttgtatttgctttgaaaatgaagttgtatcacaatactattgcatgaag 20684352  T
Q  620 aaaatagatctagaattat 638  Q
    |||||||||||||||||||    
T  20684351 aaaatagatctagaattat 20684333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 42687844 - 42687912
Alignment:
Q  19 ccaagatgattacaagtatgatggaggacctatttatagcctgaaacctcaagacaagacattaaactc 87  Q
    ||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  42687844 ccaagatgattacaagtttgatggaggacctgtttatagcctaaaacctcaagacaagacattaaactc 42687912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 400
Target Start/End: Complemental strand, 20054749 - 20054660
Alignment:
Q  313 aaaacgcacgaaccgtgctcttcttcctactttgcccgtttt--tcatgcattcttgaccttttcttgcccaaacttcaaccaaaccatc 400  Q
    ||||||||||||||||||| ||| || |  ||||| | ||||  || | ||||||||| ||||||||||| ||||||||| |||||||||    
T  20054749 aaaacgcacgaaccgtgcttttcctcttgttttgctccttttcatccttcattcttgatcttttcttgcctaaacttcaaacaaaccatc 20054660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 370 - 529
Target Start/End: Complemental strand, 21276487 - 21276328
Alignment:
Q  370 cttttcttgcccaaacttcaaccaaaccatcacacttctttgataattaacctgaaacgaaaaccatagcttttgtagtaaaatagctcaagaaattcga 469  Q
    ||||||||  |||||||||| |||||||||| | ||||||||||| | |||||||||| ||||||| |  |||||||||||| ||||||||||||| |||    
T  21276487 cttttcttatccaaacttcatccaaaccatctcgcttctttgatattcaacctgaaacaaaaaccacaatttttgtagtaaattagctcaagaaatacga 21276388  T
Q  470 ctaaaactaacgagaccttaataaattaaaatgccaaaagcaataaaaactacgacttat 529  Q
    ||| ||||||| |||| ||| | ||||||||||||||||||| | |||||||||||||||    
T  21276387 ctataactaacaagactttattgaattaaaatgccaaaagcagttaaaactacgacttat 21276328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 354 - 529
Target Start/End: Complemental strand, 8235906 - 8235730
Alignment:
Q  354 ttcatgcattcttg-accttttcttgcccaaacttcaaccaaaccatcacacttctttgataattaacctgaaacgaaaaccatagcttttgtagtaaaa 452  Q
    |||||||||||||  | ||||||||| |||||||||| ||||||||||   ||||||| ||| | |||||||||||||||||| || |||||||||||||    
T  8235906 ttcatgcattcttttatcttttcttgtccaaacttcatccaaaccatcttgcttctttcatattcaacctgaaacgaaaaccacagtttttgtagtaaaa 8235807  T
Q  453 tagctcaagaaattcgactaaaactaacgagaccttaataaattaaaatgccaaaagcaataaaaactacgacttat 529  Q
    || |||||||||| |||||||||| ||  |||| ||| | ||||||||||||||||||| | ||||||||| |||||    
T  8235806 taactcaagaaatacgactaaaaccaagaagactttattgaattaaaatgccaaaagcagttaaaactacggcttat 8235730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 372 - 534
Target Start/End: Original strand, 3363517 - 3363678
Alignment:
Q  372 tttcttgcccaaacttcaaccaaaccatcacacttctttgataattaacctgaaacgaaaaccatagcttttgtagtaaaatagctcaagaaattcgact 471  Q
    |||||||| ||||||| ||||||||| |||  |||||||||| |  |||||||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  3363517 tttcttgctcaaacttgaaccaaaccttcatgcttctttgattaccaacctgaaacgaaaacccaagcttttgtagtaaaatagctcaagaaatacgact 3363616  T
Q  472 aaaactaac-gagaccttaataaattaaaatgccaaaagcaataaaaactacgacttattatcc 534  Q
     |||||| |  | || ||| | |||||||||||||||| |||| ||||||||||||||| ||||    
T  3363617 -aaactagcaaaaacattattgaattaaaatgccaaaaacaat-aaaactacgacttatcatcc 3363678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 8236185 - 8236119
Alignment:
Q  19 ccaagatgattacaagtatgatggaggacctatttatagcctgaaacctcaagacaagacattaaac 85  Q
    ||||||| ||||||||| ||||||| || || |||||||||| ||||||||||||||| ||||||||    
T  8236185 ccaagatcattacaagtctgatggatgatctttttatagcctaaaacctcaagacaaggcattaaac 8236119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 27318437 - 27318401
Alignment:
Q  88 gttttgtaacagctccagctgacagcaaaaacgcacg 124  Q
    |||||||||||||||||||||||||||||||||||||    
T  27318437 gttttgtaacagctccagctgacagcaaaaacgcacg 27318401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 27318541 - 27318472
Alignment:
Q  19 ccaagatgattacaagtatgatggaggacctatttatagcctgaaacctcaagacaagacattaaactcg 88  Q
    ||||||||||||||| | ||| |||||||||||||||| | |  |  ||||||||||| |||||||||||    
T  27318541 ccaagatgattacaaatctgacggaggacctatttataacatagattctcaagacaaggcattaaactcg 27318472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 370 - 529
Target Start/End: Original strand, 13833628 - 13833786
Alignment:
Q  370 cttttcttgcccaaacttcaaccaaaccatcacacttctttgataattaacctgaaacgaaaaccatagcttttgtagtaaaatagctcaagaaattcga 469  Q
    |||||||||||||||||||||||||||||||    |||||||||| | ||||||||| | |||| ||||  | ||||| ||||||||||||||||| |||    
T  13833628 cttttcttgcccaaacttcaaccaaaccatcttgtttctttgatattcaacctgaaatg-aaactatagtgtctgtagcaaaatagctcaagaaatacga 13833726  T
Q  470 ctaaaactaacgagaccttaataaattaaaatgccaaaagcaataaaaactacgacttat 529  Q
    | ||||| ||| | |  ||| | |||||||||||||||| |||||||||||||| |||||    
T  13833727 ccaaaaccaacaaaattttattgaattaaaatgccaaaaacaataaaaactacggcttat 13833786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 16999335 - 16999404
Alignment:
Q  19 ccaagatgattacaagtatgatggaggacctatttatagcctgaaacctcaagacaagacattaaactcg 88  Q
    |||||||||||| |||| |||| ||||||||||||||||||| ||||||||||||| |||||||||||||    
T  16999335 ccaagatgattataagtctgattgaggacctatttatagcctaaaacctcaagacatgacattaaactcg 16999404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 11242415 - 11242346
Alignment:
Q  19 ccaagatgattacaagtatgatggaggacctatttatagcctgaaacctcaagacaagacattaaactcg 88  Q
    |||| ||||||||| |||||||||| |||||||||||||||| ||||||||||||||  |||||||||||    
T  11242415 ccaaaatgattacaggtatgatggaagacctatttatagcctaaaacctcaagacaatgcattaaactcg 11242346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 6847992 - 6848065
Alignment:
Q  19 ccaagatgattacaagtatgatggaggacctatttatagcctgaaacctcaagacaagacattaaactcgtttt 92  Q
    ||||||||| ||||||| |||||  |||||||||||||||||  ||||||||| |||| |||||||||||||||    
T  6847992 ccaagatgaatacaagtctgatgagggacctatttatagcctagaacctcaaggcaaggcattaaactcgtttt 6848065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 11268968 - 11269024
Alignment:
Q  19 ccaagatgattacaagtatgatggaggacctatttatagcctgaaacctcaagacaa 75  Q
    ||||||||||||||||| ||||||| ||||| |||||| ||| |||||| |||||||    
T  11268968 ccaagatgattacaagtttgatggaagacctttttataacctaaaaccttaagacaa 11269024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 11281231 - 11281165
Alignment:
Q  21 aagatgattacaagtatgatggaggacctatttatagcctgaaacctcaagacaagacattaaactc 87  Q
    ||||||||||||||| ||||||| ||||| |||||| ||| |||||| || ||||  ||||||||||    
T  11281231 aagatgattacaagtttgatggaagacctttttataacctaaaaccttaacacaatgcattaaactc 11281165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 11269070 - 11269106
Alignment:
Q  88 gttttgtaacagctccagctgacagcaaaaacgcacg 124  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  11269070 gttttgtaacagctctagctaacagcaaaaacgcacg 11269106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 11281131 - 11281095
Alignment:
Q  88 gttttgtaacagctccagctgacagcaaaaacgcacg 124  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  11281131 gttttgtaacagctctagctaacagcaaaaacgcacg 11281095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 372 - 455
Target Start/End: Complemental strand, 15201544 - 15201463
Alignment:
Q  372 tttcttgcccaaacttcaaccaaaccatcacacttctttgataattaacctgaaacgaaaaccatagcttttgtagtaaaatag 455  Q
    |||||||| || |||||||||||||  || |||  |||||||| | ||||||||| |||||||||||| |||||||||||||||    
T  15201544 tttcttgctcatacttcaaccaaacattctcac--ctttgatattgaacctgaaatgaaaaccatagcatttgtagtaaaatag 15201463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 372 - 455
Target Start/End: Complemental strand, 15207303 - 15207220
Alignment:
Q  372 tttcttgcccaaacttcaaccaaaccatcacacttctttgataattaacctgaaacgaaaaccatagcttttgtagtaaaatag 455  Q
    |||||||| || |||||||||||||  || ||| || |||||| | ||||||||| |||||||||| | |||||||||||||||    
T  15207303 tttcttgctcatacttcaaccaaacattctcacctcattgatattgaacctgaaatgaaaaccataacatttgtagtaaaatag 15207220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 9798738 - 9798774
Alignment:
Q  88 gttttgtaacagctccagctgacagcaaaaacgcacg 124  Q
    ||||||||||||||| |||||||||||||||||||||    
T  9798738 gttttgtaacagctctagctgacagcaaaaacgcacg 9798774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 9798640 - 9798703
Alignment:
Q  21 aagatgattacaagtatgatggaggacctatttatagcctgaaacctcaagacaagacattaaactcg 88  Q
    |||||||||||||||    |||| ||||||||||||||||  |||||| ||||||| |||||||||||    
T  9798640 aagatgattacaagt----tggatgacctatttatagcctagaacctctagacaaggcattaaactcg 9798703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 603 - 642
Target Start/End: Original strand, 19096534 - 19096573
Alignment:
Q  603 aatactattgcatgaagaaaatagatctagaattatctac 642  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  19096534 aatattattgcatgaagcaaatagatctagaattatctac 19096573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University