View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_low_25 (Length: 223)
Name: NF13129_low_25
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 52413237 - 52413045
Alignment:
| Q |
12 |
agattattcttgtcagaaatagggttgagaagtaaatgccaaacttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccaccttgactgag |
111 |
Q |
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| T |
52413237 |
agattattcttgtcagaaatagggttgagaagtaaatgccaaacttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccaccttgactgag |
52413138 |
T |
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| Q |
112 |
aattgagttatagaaaagttttgtacatatgacccgatttaaggtagaccacttcttaatatgataactatgagtgaagcctttgacacactt |
204 |
Q |
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| T |
52413137 |
aattgagttatagaaaagttttgtacatatgacccgatttaaggtagaccacttcttaatatgataactatgagtgaagcctttgacacactt |
52413045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 51100879 - 51100928
Alignment:
| Q |
53 |
aacttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccacc |
102 |
Q |
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| T |
51100879 |
aacttgtgtatggtgcacaaatttgtgcattgtgtatagtaaatgccacc |
51100928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 43568544 - 43568498
Alignment:
| Q |
56 |
ttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccacc |
102 |
Q |
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| T |
43568544 |
ttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatggcacc |
43568498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 23374863 - 23374912
Alignment:
| Q |
53 |
aacttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccacc |
102 |
Q |
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| T |
23374863 |
aacttgtgtatggtgcacaaatttgtgcattgtgtatagtaaatggcacc |
23374912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 43569192 - 43569236
Alignment:
| Q |
53 |
aacttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatg |
97 |
Q |
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| T |
43569192 |
aacttatgtatagtgcacaaatttgtgctttgtgtatagtaaatg |
43569236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 51099841 - 51099805
Alignment:
| Q |
68 |
cacaaatttgtgctttgtgtatagtaaatgccacctt |
104 |
Q |
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| T |
51099841 |
cacaaatttgtgctttgtgtatattaaatggcacctt |
51099805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 10366089 - 10366040
Alignment:
| Q |
53 |
aacttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccacc |
102 |
Q |
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| T |
10366089 |
aacttgtgtatgatgcacaaatttgtgtcttgtgcattgtaaatgccacc |
10366040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 42910044 - 42910093
Alignment:
| Q |
54 |
acttgtgtatggtgcacaaatttgtgctttgtgtatagtaaatgccacct |
103 |
Q |
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| T |
42910044 |
acttgtgtatggtgcacaaatttatgttttgtgcatgctaaatgccacct |
42910093 |
T |
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