View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_low_27 (Length: 214)
Name: NF13129_low_27
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 32896089 - 32896263
Alignment:
| Q |
18 |
cataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaagttaaaaggcagtac |
117 |
Q |
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| T |
32896089 |
cataggtggttttattgtcatcatgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatatcaagaccaaagttaaaaggcagtac |
32896188 |
T |
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| Q |
118 |
aatagcggagacggagacgtagaagaatgcagaatatagcaagtatctttagctggtaaggtagcagagatgtac |
192 |
Q |
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| T |
32896189 |
aatagtggagacggagacgtagaagaatgcagaatatagcaagcatccttagctggtaaggtagcagagatgtac |
32896263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 32919521 - 32919604
Alignment:
| Q |
18 |
cataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaa |
101 |
Q |
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| T |
32919521 |
cataggtggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa |
32919604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 32885369 - 32885509
Alignment:
| Q |
18 |
cataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaagttaaaaggcagtac |
117 |
Q |
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| T |
32885369 |
cataggtgcatttattgtgatcatgggtttgtatctgttgctgtgggggaaagaaggtgacaaagaggttgatttcaagaccaaagttaaattgcagtac |
32885468 |
T |
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| Q |
118 |
aatagcggagacggagacgtagaagaatgcagaatatagca |
158 |
Q |
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| T |
32885469 |
aaaaatggagaaggaggcttagaagaatgttgaatatagca |
32885509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 19503608 - 19503529
Alignment:
| Q |
29 |
ttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaagttaaa |
108 |
Q |
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| T |
19503608 |
ttattgtcatcatgggactatacttgttactgtgggggaaagaaggtgacagagaggttgatttcaagaccaaaggtaaa |
19503529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 32935755 - 32935838
Alignment:
| Q |
18 |
cataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaa |
101 |
Q |
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| T |
32935755 |
cataggtgcatttattgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagagattgatttgaagaccaa |
32935838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 32953150 - 32953234
Alignment:
| Q |
19 |
ataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaag |
103 |
Q |
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| T |
32953150 |
ataggtgcatttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggtcgatttcaagaccaaag |
32953234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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