View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_low_3 (Length: 642)
Name: NF13129_low_3
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 629
Target Start/End: Original strand, 45829700 - 45830307
Alignment:
| Q |
19 |
aagtttttcaccttcaatttcttccctttttatgtgtatgatgaaatgtctcattgaatttcaatctttagttctttagtttcatggaactaaatcgacg |
118 |
Q |
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|||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45829700 |
aagtttttcaccttcaatatcttccccttttatgtgtttgatgaaatgtctcattgaatttcaatctttagttctttagtttcatggaactaaatggaca |
45829799 |
T |
|
| Q |
119 |
ttgacaaaaatttctctattttttcagtctctattgaggagagcttcactgagagaaagtgatgcatttgcatttctaagggccgataatgaagattgta |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45829800 |
ttgacaaaaatttctctattttttcagtct--attgaggagagcttcactgacagaaagtgatgcatttgcatttctaagggccgataatgaagattgta |
45829897 |
T |
|
| Q |
219 |
ttacgtattctgggttctgtgaagcacttcgacaggtttgttgcagcattaactgtgccatcagcacgctaaaagaccatttattgctcatgcttatctg |
318 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |
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| T |
45829898 |
ttacatattctgggttctgtgaagcacttcgacaggtttgttgcagcattaactgtgccattagcacgctaaaagaccatttagcgcacatgcttatctg |
45829997 |
T |
|
| Q |
319 |
aaaatccatgtgtttataagnnnnnnnnncttatttcaattctttgcagctcaatttaattggccattttcatgggttgaatgaggaagagaaaggagtc |
418 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45829998 |
aaaatccacgtgtttataag-ttttttttcttatttcaattctttgcagctcaatttaattggccattctcatgggttgaatgaggaagagaaaggagtt |
45830096 |
T |
|
| Q |
419 |
gtgggtccaagccgacatagatggaaactgtgttcttgactataaagaatttctggtaaaatatttcacttgaatgaatataatcaacaataaatcatac |
518 |
Q |
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| T |
45830097 |
gtgggtccaagccgacatatatggaaatggtgttcttgactataaagaatttatggtaaaatatttcacttgaatgaatataatcaacaataaatcatac |
45830196 |
T |
|
| Q |
519 |
aagaaaagactctgaattttgaattacatttttccttggataaactatatctatgcaaccaatgactagaggcttagagtcaaccaatgactataaacta |
618 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45830197 |
aagaaaagactctgaattttgaattacatttttcctcagataaactatatatatgcaaccaatgactagaggcttagtgtcaaccaatgactataaacta |
45830296 |
T |
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| Q |
619 |
tatctgtgctc |
629 |
Q |
| |
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||| ||||||| |
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| T |
45830297 |
tatatgtgctc |
45830307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 91 - 544
Target Start/End: Complemental strand, 42558333 - 42557882
Alignment:
| Q |
91 |
tctttagtttcatggaactaaatcgacgttgacaaaaatttctctattttttcagtctctattgaggagagcttcactgagagaaagtgatgcatttgca |
190 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| ||| |
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| T |
42558333 |
tctttagtttcgtggaactaaatcgacgttgacaaaattttctctattttttcaggatctattgaggcgagcttcactgacagaaagtgatgcattcgca |
42558234 |
T |
|
| Q |
191 |
tttctaagggccgataatgaagattgtattacgtattctgggttctgtgaagcacttcgacaggtttgttgcagcattaactgtgccatcagcacgctaa |
290 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
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| T |
42558233 |
tttctaagggccgataatgaagattgtattacgtattctggtttctgtgaagcacttcgacaggtttgttgcagtattaactgtgcgattagcacgctaa |
42558134 |
T |
|
| Q |
291 |
aagaccatttattgctcatgcttatctg-aaaatccatgtgtttataagnnnnnnnnncttatttcaattctttgcagctcaatttaattggccattttc |
389 |
Q |
| |
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||||||||||| || |||||| ||||| |||||||| ||||||||||| || |||||||||||| ||||||||||||||||| |||| || |
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| T |
42558133 |
aagaccatttaacgcacatgctgatctgaaaaatccacgtgtttataaggtttt-----ttttttcaattctttacagctcaatttaattggtcattctc |
42558039 |
T |
|
| Q |
390 |
atgggttgaatgaggaagag--aaaggagtcgtgggtccaagccgacatagatggaaactgtgttcttgactataaagaatttctggtaaaatatttcac |
487 |
Q |
| |
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||| |||||||||||||||| |||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
42558038 |
atgagttgaatgaggaagagataaaggagttgtgggtccaagctgacatagatggaaatggtgttcttgactataaagaatttctggtaaagtatttcac |
42557939 |
T |
|
| Q |
488 |
ttgaatgaatataatcaacaataaatcatacaagaaaagactctgaattttgaatta |
544 |
Q |
| |
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||||| |||||| ||||||| || |||||||||||||||||||||||||||||| |
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| T |
42557938 |
ttgaaattatataaacaacaatctataatacaagaaaagactctgaattttgaatta |
42557882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 22141366 - 22141304
Alignment:
| Q |
19 |
aagtttttcaccttcaatttcttccctttttatgtgtatgatgaaatgtctcattgaatttca |
81 |
Q |
| |
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|||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||| |
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| T |
22141366 |
aagtttttcaccttcactttcatccccttttatgtgtttgatgaaatgtctcattgaatttca |
22141304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 29160064 - 29160154
Alignment:
| Q |
158 |
agagcttcactgagagaaagtgatgcatttgcatttctaagggccgataatgaagattgtattacgtattctgggttctgtgaagcacttc |
248 |
Q |
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|||||||| | || ||| |||||||||||||| ||||||| ||| || |||||||||||||||| |||||||| || ||| ||||||||| |
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| T |
29160064 |
agagcttcgcagacagagagtgatgcatttgcttttctaaaggctgacgatgaagattgtattacatattctggtttttgtaaagcacttc |
29160154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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