View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_low_5 (Length: 577)
Name: NF13129_low_5
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 17 - 563
Target Start/End: Complemental strand, 42678504 - 42677958
Alignment:
| Q |
17 |
tgaatgatgtttagagcatcaacgttggctttcaagtaactgtattgctcgttaggttggaggcgacggcggactgtgggtgaatgaacaattccaggaa |
116 |
Q |
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| T |
42678504 |
tgaataatgtttagagcatcaacgttggctttcaagtaactgtattgctcgttaggttggaggcgacggcggactgtgggtgaatgaacaattccaggaa |
42678405 |
T |
|
| Q |
117 |
attcagtgtccattgagatgaaattgtatttaccaattaactgactaatgagcttgaattcgcaagacaaattgtatccccacactttacggatcatgat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42678404 |
attcagtgtccattgagatgaaattgtatttaccaattaactgactaatgagcttgaattcgcaagacaaattgtatccccacactttacggatcatgat |
42678305 |
T |
|
| Q |
217 |
tggttttgaactaggctcttccttcatcattatcattgtggtcttgaatcaggtacaagttgaaattctgagcaagaaacgatgagaaagaatgttaacc |
316 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42678304 |
tggttttgaaccagggtcttccttcatcattatcattgtggtcttgaatcaggtacaagttgaaattctgagcaagaaacgatgagaaagaatgttaaca |
42678205 |
T |
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| Q |
317 |
acccaatnnnnnnnnttctctcagcaatatttaaacattatacaactagcagcagcatgtgtaaaagagggggttaatgtggtgaatttaaaacgcacaa |
416 |
Q |
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| T |
42678204 |
aaccaataaaaaaaattctctcagcaatatttaaacattaaacaactagcagcagcatgtgtaaaagagggggttaatgtggtgaatttacaacgcacaa |
42678105 |
T |
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| Q |
417 |
gcataacttaattaactaacaactattcattctctaactctaacatcaacaccagaaacagtaaagaagggaggataaataaaatatgctttcagaaaat |
516 |
Q |
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| T |
42678104 |
gcataacttaattaactaacaactattcattctctaactctaacatcaacaccagaaacagtaaagaagggaggataaataaaatatgctttcagaaaat |
42678005 |
T |
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| Q |
517 |
cattaccaaatttaaagaaagaaatagtcataaatttaagaagtaaa |
563 |
Q |
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| T |
42678004 |
cattaccaaatttaaagaaagaaatagtcataaatttaagaagtaaa |
42677958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 519
Target Start/End: Complemental strand, 42677362 - 42677318
Alignment:
| Q |
475 |
cagtaaagaagggaggataaataaaatatgctttcagaaaatcat |
519 |
Q |
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| T |
42677362 |
cagtaaagaagggaagataaataaaatatactttcagaaaatcat |
42677318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 540
Target Start/End: Complemental strand, 42677868 - 42677804
Alignment:
| Q |
476 |
agtaaagaagggaggataaataaaatatgctttcagaaaatcattaccaaatttaaagaaagaaa |
540 |
Q |
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| T |
42677868 |
agtaaagaagggaggagtaataaaatatactttctgaaaatcattatcaaacgtaaagaaagaaa |
42677804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 54704244 - 54704476
Alignment:
| Q |
17 |
tgaatgatgtttagagcatcaacgttggctttcaagtaactgtattgctcgttaggttggaggcgacggcgg---actgtgggtgaatgaacaattccag |
113 |
Q |
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|||||||| || ||||||||||| || | |||||| ||||||||||| |||| ||||||||| ||||| || ||| || ||| | || || |||| |
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| T |
54704244 |
tgaatgattttaagagcatcaacatttgatttcaaataactgtattgttcgtaaggttggagatgacggtggtcgactttgagtggaaaaataacgccag |
54704343 |
T |
|
| Q |
114 |
gaaattcagtgtccattgagatgaaattgtatttaccaattaactgactaatgagcttgaattcgcaagacaaattgtatccccacactttacggatcat |
213 |
Q |
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|||||||||| ||||||||||||||||||||| | |||| || || |||||| |||||||| || ||||| | |||| |||| ||| ||||| |
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| T |
54704344 |
gaaattcagtatccattgagatgaaattgtatgttccaacaaatccacgaatgagattgaattcctcttgcagattgtgtgcccaaacttcacgtatcat |
54704443 |
T |
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| Q |
214 |
gattggttttgaactaggctcttccttcatcat |
246 |
Q |
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|||||||| ||||||||| ||||||||| |||| |
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| T |
54704444 |
gattggttctgaactaggatcttccttcgtcat |
54704476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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