View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_low_7 (Length: 563)
Name: NF13129_low_7
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 481; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 552
Target Start/End: Complemental strand, 31024786 - 31024251
Alignment:
| Q |
18 |
attcattgattccctccttaacgattttgctccaagatcattccttaaaaaa-taaacaaatacttgtttgactaaattagaacataacaatgtataatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31024786 |
attcattgattccctccttaacgattttgctccaagatcattccttaaaaaaataaacaaatacttgtttgactaaattagaacataacaatgtataatt |
31024687 |
T |
|
| Q |
117 |
aatgcacatgcaagtgaactagtttccttagtaactaacttctttaaaattattccaaaaatgaacatgcatgttaatagattagagctatggcaagttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31024686 |
aatgcacatgcaagtgaactagtttccttagtaactaacttctttaaaattattccaaaa-tgaacatgcatgttaatagattagagctatggcaagttt |
31024588 |
T |
|
| Q |
217 |
tgttttaagcaaaacttgttt-atcttttggtactggatttagaacatgatttaagtttaacgttgtttatgtaggatgtggatttgaaggcttatcgac |
315 |
Q |
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||||||||||| || |||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31024587 |
tgttttaagcataatttgttttatcttttggtagtggatttagaacatgaattaaggttaacgttgtttatgtaggatgtggatttgaaggcttatcgac |
31024488 |
T |
|
| Q |
316 |
tttagttggtagtaatcccagtgttggtaagagtactctatggtttgatgcttttgtacatgaactaagggttgtcatcctttttcagttgtgtgatgat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31024487 |
tttagttggtagtaatcccagtgttggtaagagtactctatggtttgatgcttttgtacatgaactaagggttgtcatcctttttcagttgtgtgatgat |
31024388 |
T |
|
| Q |
416 |
atatggtaacctagactgaatgtagttatattcagcacattatgacattgtttagacctttaaacttgttcaattttggatatttagaacaagctgtctg |
515 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
31024387 |
atatgataacctagactgaatgtagttatattcagcacattatgacattgtttagacctttgaacttgttcaattttggatatttagaacaagttgtctg |
31024288 |
T |
|
| Q |
516 |
ataggaaattgaacatcaatcctctttttatgtctgt |
552 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
31024287 |
ataggaaattgaacatcaatcctctttttatgtctgt |
31024251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 23 - 311
Target Start/End: Complemental strand, 31072677 - 31072395
Alignment:
| Q |
23 |
ttgattccctccttaacgattttgctccaagatcattccttaaaaaataaacaaatacttgtttgactaaattag---aacataacaatgtataattaat |
119 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||||||| ||||| ||| || | | |||||||| || ||| ||||||| |||||||||||||| |
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| T |
31072677 |
ttgattccctccttgaggattttgctccaagatcattcctgaaaaataaaaaaattgcatgtttgaccaaggtagaacaacataataatgtataattaat |
31072578 |
T |
|
| Q |
120 |
gcacatgcaagtgaactagtttccttagtaactaacttctttaaaattattccaaaaatgaacatgcatgttaatagattagagctatggcaagttttgt |
219 |
Q |
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||||||||||| ||||||||||||| ||||||||||| ||| || ||||||| |||||||| |||||||||||||| |||||| |||| |||| | |
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| T |
31072577 |
gcacatgcaagggaactagtttcctccgtaactaacttgttt-aagttattcc-aaaatgaa----catgttaatagatt--agctattgcaaattttat |
31072486 |
T |
|
| Q |
220 |
tttaagcaaaacttgtttatcttttggtactggatttagaacatgatttaagtttaacgttgtttatgtaggatgtggatttgaaggcttat |
311 |
Q |
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|||||||| |||||||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||| ||||||||| |||| |||||||||| |
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| T |
31072485 |
tttaagcataacttgtttatcttttggtagtggatttggaacatga-ttaaggttaactttgtttacgtaggatgtagattagaaggcttat |
31072395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 416 - 553
Target Start/End: Complemental strand, 31071494 - 31071359
Alignment:
| Q |
416 |
atatggtaacctagactgaatgtagttatattcagcacattatgacattgtttagacctttaaacttgttcaattttggatatttagaacaagctgtctg |
515 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||| |||||| |
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| T |
31071494 |
atatggtaacctggactgactgtagttatattcaccacattatgatattgtttagacctttgaacttgttcaattttg--aatttagaacaagttgtctg |
31071397 |
T |
|
| Q |
516 |
ataggaaattgaacatcaatcctctttttatgtctgtg |
553 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||| |
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| T |
31071396 |
atagaaaattgaacatcaatcctcttttgatgtctgtg |
31071359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 446 - 553
Target Start/End: Complemental strand, 31027966 - 31027859
Alignment:
| Q |
446 |
ttcagcacattatgacattgtttagacctttaaacttgttcaattttggatatttagaacaagctgtctgataggaaattgaacatcaatcctcttttta |
545 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
31027966 |
ttcagcacattatgacattgttttgacctttgaacttgttcgattttggatatatagaacaagttgtttgataggaaattgaacatcaatcctcttttta |
31027867 |
T |
|
| Q |
546 |
tgtctgtg |
553 |
Q |
| |
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|||||||| |
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| T |
31027866 |
tgtctgtg |
31027859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 31072383 - 31072332
Alignment:
| Q |
371 |
gtacatgaactaagggttgtcatcctttttcagttgtgtgatgatatatggt |
422 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31072383 |
gtacatgaactaaggtttgtcatcctttttcagttgtgtgatgatatatggt |
31072332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 427
Target Start/End: Complemental strand, 31030315 - 31030278
Alignment:
| Q |
390 |
tcatcctttttcagttgtgtgatgatatatggtaacct |
427 |
Q |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
31030315 |
tcatcctttttcacttgtgtgatgatatatggtaacct |
31030278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 31040321 - 31040265
Alignment:
| Q |
205 |
tatggcaagttttgttttaagcaaaacttgtttatcttttggtactggatttagaac |
261 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||||||| | |||||||||||| |
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| T |
31040321 |
tatggcaggttttattgtaagcaaaacttgtttatcttttgattgtggatttagaac |
31040265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 540
Target Start/End: Original strand, 21217209 - 21217281
Alignment:
| Q |
466 |
tttagacctttaaacttgttcaattttggatatttagaacaagctgtctgataggaaattgaacatcaatcctct |
540 |
Q |
| |
|
|||||| |||| |||||||| |||||||||| |||||| ||| ||| ||| |||||||||||||||||| |||| |
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| T |
21217209 |
tttagaactttgaacttgttaaattttggat--ttagaataagatgtttgagaggaaattgaacatcaatgctct |
21217281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 188 - 288
Target Start/End: Complemental strand, 33559695 - 33559597
Alignment:
| Q |
188 |
tgttaatagattagagctatggcaagttttgttttaagcaaaacttgtttatcttttggtactggatttagaacatgatttaagtttaacgttgtttatg |
287 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||| ||| |
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| T |
33559695 |
tgttaatagattag--ctatggcaaattttattttaagcataacttgtttatcttttggtagtggatacagaacatgatttaaggttaactttgttaatg |
33559598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 33559839 - 33559719
Alignment:
| Q |
18 |
attcattgattccctccttaacgattttgctccaagatcattccttaaaaaataaacaaatacttgtttgactaa---attagaacataacaatgtataa |
114 |
Q |
| |
|
||||||||||||||||||| | || |||||| ||||||||||||| |||| ||| || || |||||||||||| || | ||||||| || ||| |
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| T |
33559839 |
attcattgattccctccttgaggaatttgcttcaagatcattcctgaaaa---aaaaaattaattgtttgactaaagtataacaacataataacgta--- |
33559746 |
T |
|
| Q |
115 |
ttaatgcacatgcaagtgaactagtttc |
142 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
33559745 |
-taatgcacatgcaagtgaactagtttc |
33559719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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